Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02837 ATGGTTTTCTGCGATCATTGTGTCAAAGACGTTATCGCCGAGCGATACGATGATTGTTACTTAACTTGTACTTCTTGTGGGAAGGTGTTGGAAGATCAGTTTTATTCTGAGGAGCCAACTTTTTTTAAAAACTCTGCCGGACAGAGCAAATTATCGGGAACTTATGTCCAATCGGTTCAAAGAGAGATCTCTGAATCACGTCGAAGGACTTTATATAGAGCTTCTAAAGAAATGGAATATTTAAGTCTCAACCTTGGAGTAACTGACGATAATATGATCAGCCAAGCTTTGGCCTTCTATGAAATAGCACTTGCAAAGAATTTCACCCGGGGACGTAAATCAGAGCAAGTACAGGCTGCATGTCTCTATATTGCATTTCGGCAAAATAAAAAGCCATACTTTCTTATTGAATTTTCAAATAGTTTAAGGATAAATGTCTACAAGCTTGGAGAAGTTTTTTTGCAGCTCTGTGAAGTTTTAAGGCTTAATAATCATCCACTTGTTAAAAAGCCTATTGATCCCTGTCTTTTTCTTTACAAATATACTAGTAATTTGTTAGGCCACAGAAATGGGGTTGTCTCTGAAACTGCACTGAGCATTATTAAAGATATGAACCGTAACTGGATGCAGACAGGGAGGAAACCTAGTGGATTATTTGCTGCTGCATTATTCATCTCTAGTAATGGACATGGTCATAACATCTGTAAGACAGATATTCTAAGACTCTTCCATGTATGTGAGGCAACATTGACCAAGCGATTGATAGAATTTGAGAATACAGACTCTTCTAGCTTGACAGTTGAGGAGTTGAATGCAATGGCAAAAGAGTACGAAAAAACTCCAGTTGTTTTGCCAAACAGTGAATTTAAAGGATCTACTTCAAACGATCTAGTGTGTGAGCACAAAGATAGCAATGTGCCCTGTTTTGCACTTGGACTATGTGAAGCTTGTTACAAGGATTTTGATATGCTCTCGGGAGGATTTGGTGGTGGTTTGGACCCTCCTGCGTTCCAGCGTGCTGAGAGGGAGAGAGTAAAGAAAACAGTTTCTAAGGAAAGTGCAGAAGTCGTGAAGGCATCAAATAGTGCATGCAAGGAACAAAAAGAAGATTTGCCTGCCTCTATGCTAGAAAGGGATGAAACCAGTGCGGAAGATGACACCAGTGCAGAAGATCAAGATGAATCAGGAAATTTCTCTGATATCGATGACCGAGAGGTTGACGGGTACCTTTTCAACGAGGAAGAGAAACATTACAAGAAGATATATTGGGAAAATGAGAACCGCGAGTATCTTGCGGAGCAAGCAGTCAAGGAAGCAGCTGCAGCAGCTGCGAAGAAAATTTATGAAGCAAATTTGAAAAACTGTCCAGTAGAATCAAGAGAACTTTATGAATCTACTACTGCAGCTGTGGCAAAATCCAGAAAGCAGAGACGAGCTCAGCAGGCAAAAAATTCAGGGCCTGCTAAATCTGCTGCAGAAGCCGCTTGTCAAATGGTGAAAAAAAAGAGGCTCAGTAGCAAAGTCAATTTTGAGTGCCTGGCAAAATTATTTGAAAACGAACCAGCAGATGTGCGTGAACCCAAGAAAGTACGATTTGATCTAGCCTCTGATGATCATGACAAATTTCAGTCTGAGGTTCAAGACTCAAAGGATGACGAGCTTGGATCAGAGGATAATTTTGAGGATGGTGACAAGGATTGGTGTAATAATGAAAATATGGATGAGACATATTTTCCCGAGGAAGATGGTTATAATTATGATGAGGATCATTACTGA 1776 0.4009 MVFCDHCVKDVIAERYDDCYLTCTSCGKVLEDQFYSEEPTFFKNSAGQSKLSGTYVQSVQREISESRRRTLYRASKEMEYLSLNLGVTDDNMISQALAFYEIALAKNFTRGRKSEQVQAACLYIAFRQNKKPYFLIEFSNSLRINVYKLGEVFLQLCEVLRLNNHPLVKKPIDPCLFLYKYTSNLLGHRNGVVSETALSIIKDMNRNWMQTGRKPSGLFAAALFISSNGHGHNICKTDILRLFHVCEATLTKRLIEFENTDSSSLTVEELNAMAKEYEKTPVVLPNSEFKGSTSNDLVCEHKDSNVPCFALGLCEACYKDFDMLSGGFGGGLDPPAFQRAERERVKKTVSKESAEVVKASNSACKEQKEDLPASMLERDETSAEDDTSAEDQDESGNFSDIDDREVDGYLFNEEEKHYKKIYWENENREYLAEQAVKEAAAAAAKKIYEANLKNCPVESRELYESTTAAVAKSRKQRRAQQAKNSGPAKSAAEAACQMVKKKRLSSKVNFECLAKLFENEPADVREPKKVRFDLASDDHDKFQSEVQDSKDDELGSEDNFEDGDKDWCNNENMDETYFPEEDGYNYDEDHY 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02837 591 MobiDBLite consensus disorder prediction 468 492 - -
Trre14g02837 591 MobiDBLite consensus disorder prediction 534 591 - -
Trre14g02837 591 Gene3D - 173 264 - -
Trre14g02837 591 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Trre14g02837 591 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Trre14g02837 591 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Trre14g02837 591 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Trre14g02837 591 MobiDBLite consensus disorder prediction 362 382 - -
Trre14g02837 591 Pfam Brf1-like TBP-binding domain 399 518 IPR011665 -
Trre14g02837 591 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
Trre14g02837 591 Pfam Transcription factor TFIIB repeat 172 259 IPR013150 GO:0017025
Trre14g02837 591 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Trre14g02837 591 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
Trre14g02837 591 Gene3D Single helix bin 392 441 - -
Trre14g02837 591 SUPERFAMILY Zinc beta-ribbon 2 45 - -
Trre14g02837 591 FunFam Transcription factor IIIB subunit 173 262 - -
Trre14g02837 591 MobiDBLite consensus disorder prediction 534 550 - -
Trre14g02837 591 Gene3D - 63 165 - -
Trre14g02837 591 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 508 IPR000812 GO:0006352|GO:0070897
Trre14g02837 591 MobiDBLite consensus disorder prediction 383 398 - -
Trre14g02837 591 SUPERFAMILY Cyclin-like 84 163 IPR036915 -
Trre14g02837 591 MobiDBLite consensus disorder prediction 469 487 - -
Trre14g02837 591 MobiDBLite consensus disorder prediction 358 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02837 Trre-Chr14 29767615 29782378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02837 1 502 Inorganic Solute Cotransporters AT2G01280 40.421 2.19e-94 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02837 K15196 - gmx:100817609 671.003