Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02824 ATGCGCAACAACAACACGTCACAAGGTAGCAGAAGCAACAATCACAACAATATGAGCATTCTATCTTCCCGAACAAGTTCACGTTCTGTAACAGAAACCGTTAATGGTTCACACAAGTTCGTAATTAAGGGATATTCACTTGCAAAAGGAATGGGAGTTGGAAAACACATAGCAAGCGAAACTTTCACCGTCGGTGGTTATCAATGGGCAATTTACTTCTATCCCGACGGTAAAAATCCTGAAGATAATTCTGCATATGTTTCTGTTTTCATTGCTCTTGCTTCTGAAGGTACCGATGTTAGAGCTCTTTTTGAACTCACTTTGCTTGATCAGAGTCCTAATGGAAAACATAAGGTTCATAGTCACTTTGATCGATCTCTTGAAAGTGGTCCTTATACTCTCAAGTATAGAGGCAGCATGTGGGGTTATAAACGGTTTTTCAAGCGTGCTCAACTTGAGGCCTCGTCCTTCCTTAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTGGTTGTGTCGTCCATTGATTGTTCTAAACTGACCACCATACATGTGCCTGAATCTGATATTGGATCGCATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCTGTTGGTGGAGAAAGGTTTCATGCACACAAGCTTGTAATGGCAGCTCGGTCACCTGCATTTGAAGCCGAGTTTTTCAACCGGATGGAGGAAGATGACTGTGATGTAGTTGTTACAGACATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAAAGACACTCTTATAGAAGATGAAGAGTTCTTCATGTCACGCTCATCATTCCTGCCTTCAATATCTGAAACATTTGCAGCAAAATTATTAGCTGCTGCGGAAAAGTATGATTTGCCTAGACTTAAGCTGATGTGTGAGTCTGTACTTTGCAAAGAAATCTCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCCGATCGCTATCATGCTACGGAGTTGAAGTCCATCTGTCTACAGTTTTCTGCTGAAAACCTCGTTGCTGTGATGCAGTCTGATGGTTTTGAGTATCTAAAGGAACACTGTCCGTTGCTGCAATCAGAGCTGCTTAAGACAGTTGCAGGAGGCGAAGAGGAATTTAGTGGAGAAGGAAAATGCCGAAGTGTGTGGGCCCAAGTTTCTGATGGCGGTGAGACTAATGATAGGAGCGTAAGACAACAAACCTGGGAAAATGGAGTTGAAAGAGGTCAGAACTTATGGGTTAACCTTTCTGATGGTGTTAACAATAATGATGGGAGTCCAGGGCAAGAAGCTTGA 1323 0.4203 MRNNNTSQGSRSNNHNNMSILSSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASSFLKDDCLKINCTVGVVVSSIDCSKLTTIHVPESDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVMAARSPAFEAEFFNRMEEDDCDVVVTDMEPKVFKALLHFIYKDTLIEDEEFFMSRSSFLPSISETFAAKLLAAAEKYDLPRLKLMCESVLCKEISIDSVAYILALADRYHATELKSICLQFSAENLVAVMQSDGFEYLKEHCPLLQSELLKTVAGGEEEFSGEGKCRSVWAQVSDGGETNDRSVRQQTWENGVERGQNLWVNLSDGVNNNDGSPGQEA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02824 440 SUPERFAMILY TRAF domain-like 32 171 - -
Trre14g02824 440 SUPERFAMILY POZ domain 183 314 IPR011333 -
Trre14g02824 440 ProSiteProfiles MATH/TRAF domain profile. 35 169 IPR002083 GO:0005515
Trre14g02824 440 Pfam BTB/POZ domain 197 314 IPR000210 GO:0005515
Trre14g02824 440 CDD BTB_POZ_BPM_plant 191 313 - -
Trre14g02824 440 Gene3D - 315 389 - -
Trre14g02824 440 ProSiteProfiles BTB domain profile. 205 271 IPR000210 GO:0005515
Trre14g02824 440 Gene3D Potassium Channel Kv1.1; Chain A 181 310 IPR011333 -
Trre14g02824 440 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 372 IPR045005 GO:0016567
Trre14g02824 440 SMART BTB_4 205 316 IPR000210 GO:0005515
Trre14g02824 440 FunFam BTB/POZ and MATH domain-containing protein 4 34 173 - -
Trre14g02824 440 MobiDBLite consensus disorder prediction 1 31 - -
Trre14g02824 440 CDD BACK_AtBPM-like 313 374 IPR034090 -
Trre14g02824 440 SMART math_3 40 152 IPR002083 GO:0005515
Trre14g02824 440 FunFam BTB-POZ and math domain 1 181 310 - -
Trre14g02824 440 CDD MATH 36 169 IPR002083 GO:0005515
Trre14g02824 440 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 34 173 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02824 Trre-Chr14 29542417 29548392 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre14g02824 BTB 7.5e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02824 K10523 - gmx:100809683 784.637