Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02749 ATGAGTTTTCAAGATATTAAACATGGCTCCAATCCTCCTTCTCGCCGAACTCAATCACCGTCGCAAGCCGTTGCTGCCGGAATTTTCCAGATCAATACCGCCGTTGCTACTTTCCGACGACTCGTTGATTCTGTTGGAACCGTTAAAGACACTCCAGAGCATCGTCAGAAACTGCACAATACAAGGCAGAGGATATTGCAGCTTGTGAAGGATACTTCTGCTAAGCTCAAATCTTTGTCTGAATCTAATCGTGATGCTAATGCCAATGCTAGTAAGAAAATTGAAGATGCTAAGTTGGCAAGAGATTTCCAAACCACATTGCAAGAATTCCAAAAAGTTCAACAGCTTGCTTCTGAGCGCGAAACTACTTACACTCCTGCCGCCCCAACTTCTTTACCAACAAGCTCGGGCCCTGGTGAAGAATCGATTGAGATAGACGCCGAAAGCCAACCTTTTATCAGAGGGCAGTTGAGGCAAGAGATAGTTCTATTGGATAATGAAATATCCTTCAATGAGGCCATGATTGAAGAAAGAGATCAGGGTCTTAGAGAGATAGAAGAACAAATTGGAGAAGCAAATGAAATATTCAAGGACCTTGCTGTTTTGGTTCATGATCAGGGGATTGTTATTGATGACATTCAATCAAATATAGACACTTCTGCTGGTGCAACATCTCAAGCTAAGGTCCAGCTAGTAAAAGCTTCCAAAAGTGTGAAATCCAAAAATAAATTGTGTTGGTGGGTGCTTTTAATTTTTGTGGCAGTGCTGGTCATCTTCCTCATTATACTTCTTACTTAG 798 0.4185 MSFQDIKHGSNPPSRRTQSPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKSLSESNRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASERETTYTPAAPTSLPTSSGPGEESIEIDAESQPFIRGQLRQEIVLLDNEISFNEAMIEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVIDDIQSNIDTSAGATSQAKVQLVKASKSVKSKNKLCWWVLLIFVAVLVIFLIILLT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02749 265 Coils Coil 69 89 - -
Trre14g02749 265 CDD SNARE_Qa 175 233 - -
Trre14g02749 265 Gene3D - 166 265 - -
Trre14g02749 265 SMART SynN_4 8 122 IPR006011 GO:0016020
Trre14g02749 265 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Trre14g02749 265 PANTHER SYNTAXIN 22 255 IPR045242 -
Trre14g02749 265 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g02749 265 SUPERFAMILY t-snare proteins 19 227 IPR010989 GO:0016020|GO:0016192
Trre14g02749 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Trre14g02749 265 Gene3D - 9 129 - -
Trre14g02749 265 Pfam SNARE domain 209 260 IPR000727 -
Trre14g02749 265 MobiDBLite consensus disorder prediction 115 143 - -
Trre14g02749 265 MobiDBLite consensus disorder prediction 115 138 - -
Trre14g02749 265 SMART tSNARE_6 167 234 IPR000727 -
Trre14g02749 265 FunFam Syntaxin-22 like 15 128 - -
Trre14g02749 265 FunFam Syntaxin-22 like 165 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02749 Trre-Chr14 28287997 28290743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02749 1 252 SNARE and Associated Proteins AT5G46860 59.770 1.62e-99 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02749 - - gmx:100787141 411.379