LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g02701	ATGGCTGACGGTGAATCTGACAAGAACATTGAGATATGGAAGATGAAAAACTTGATTAAAGAACTTGAGGCTGCAAGAGGTAATGGTACTAGCATGATTTCTTTGATAATACCTCCGCGCGATCAAATATCTCGTGTCAATAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGTAGAGTAAACCGACAATCTGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTCCTTTATACTGGTACCATTCTCACTGATGACGGCAAGGAAAAGAAAGTGACAATTGATTTTGAACCTTTCAGACCAATCAATGTATCGCTTTATCTCTGCGATAACAAATTTCATACAGAAGCTCTAAATGAACTTCTAGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTCGGAACTTTAAGTGGAAATACTCGTAAGGTGCTTCATAAATTTACTGTCGATCTACCAAAGAAGCACGGTAGAGGAGGGCAGTCATCTGTGCGTTTTGATCGTATTAGGACTGAAAAACGGCACAATTACGTTAGGAAGACTGCAGAACTGGCAACTCAGTATTACATCAACCCTGCTACTAATCAACCTAATGTTTCAGGACTCATACTTGCTGGTTCGGCCGATTTCAAGACTGAGTTGAGCCAGTCAAATATGTTCGATCCTCGTTTACAAGCAAAAATATTGAAAAAAGTTGATGTTTCCTATGGTGGGGAAAATGGATTTAACCAAGCTATTAGATTATCTGCAGAGATTTTATCTAATGTGAAGTTCGTACAAGAGATACGCTTATTAGAAAAATATTTCGAAGAGATAAAACAAGAAACCGGGAAATATGTTTACGGAGTTGATGACACATTGAAGGCCCTAGAGATGGGTGCTGTTGAGACACTCATTGTATGGGAGAATTTGGATATTAATAGGTATGTGCTGAAAAATGCTACCACTGGTGAGATTGTAATAAAGCATTTGAAGAAGGAACAAGACGGTGATCAAAGCAATTTCCGCGATGCGGCTACCTCTGCAGAGTTGGAGGTTCAAGAGAAGATGCCATTACTCGAGTGGTTTGCAAATGAGTATAAGAAAACTGGATGCTTGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAGTTTTGCAGGGGGTTTGGTGGTATTGGAGGTATGCTTCGCTACAAGCTTGATATCAGATCATTTGACGAGTTATCAGATGACGATGATATCGACGATGATGATAATGATAATGATGATGGTGTAGTACTAAGCGCCGGCGAAAACCCTAGCTTACCCCAGGCTATTCTTTCTGTCTACATAAACAATGGCTGA	1395	0.3957	MADGESDKNIEIWKMKNLIKELEAARGNGTSMISLIIPPRDQISRVNKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTDDGKEKKVTIDFEPFRPINVSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRKVLHKFTVDLPKKHGRGGQSSVRFDRIRTEKRHNYVRKTAELATQYYINPATNQPNVSGLILAGSADFKTELSQSNMFDPRLQAKILKKVDVSYGGENGFNQAIRLSAEILSNVKFVQEIRLLEKYFEEIKQETGKYVYGVDDTLKALEMGAVETLIVWENLDINRYVLKNATTGEIVIKHLKKEQDGDQSNFRDAATSAELEVQEKMPLLEWFANEYKKTGCLLEFVTNKSQEGSQFCRGFGGIGGMLRYKLDIRSFDELSDDDDIDDDDNDNDDGVVLSAGENPSLPQAILSVYINNG	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g02701	464	SUPERFAMILY	Translational machinery components	141	275	-	-
	Trre14g02701	464	Gene3D	eRF1 domain 1	1	134	IPR024049	-
	Trre14g02701	464	MobiDBLite	consensus disorder prediction	427	448	-	-
	Trre14g02701	464	SMART	eRF1_1_2	3	139	IPR005140	-
	Trre14g02701	464	MobiDBLite	consensus disorder prediction	427	441	-	-
	Trre14g02701	464	SUPERFAMILY	L30e-like	277	419	IPR029064	-
	Trre14g02701	464	Pfam	eRF1 domain 1	20	137	IPR005140	-
	Trre14g02701	464	PANTHER	PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1	4	429	IPR004403	GO:0003747\|GO:0006415
	Trre14g02701	464	Gene3D	-	278	436	IPR029064	-
	Trre14g02701	464	NCBIfam	peptide chain release factor aRF-1	11	416	IPR004403	GO:0003747\|GO:0006415
	Trre14g02701	464	Pfam	eRF1 domain 3	280	417	IPR005142	-
	Trre14g02701	464	Pfam	eRF1 domain 2	143	276	IPR005141	-
	Trre14g02701	464	FunFam	Peptide chain release factor subunit 1	278	436	-	-
	Trre14g02701	464	SUPERFAMILY	N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1	6	139	IPR024049	-
	Trre14g02701	464	FunFam	Eukaryotic peptide chain release factor subunit 1	1	134	-	-
	Trre14g02701	464	Gene3D	eRF1 domain 2	135	276	IPR042226	-
	Trre14g02701	464	FunFam	Eukaryotic peptide chain release factor subunit 1	135	276	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g02701	Trre-Chr14	27541766	27548038	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g02701	1	435	Eukaryotic Initiation Factors Gene Family	AT3G26618	85.977	0.0	781

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g02701	K03265		-	egr:104419069	774.237