Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02620 ATGGAAGAACCAATTGTTGTTAACAAAGGTGAAGATCAAGTTCTTGATTTGCCACCAGGTTTCAGATTCCACCCAACAGATGCTGAGATAATTGTTTTTTATCTCACTGAAAAGGTTAAAAATAGCAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCAAAGATGGGTGAGAAAGAATGGTACTTTTTTTGTCAGAAAGATAGAAAATATCCAACAGGGATGAGAACTAATAGAGCAACAGTTTCTGGTTACTGGAAAGCTACAGGTAAAGACAAAGAGATTTATCACAAAGGAAAATCAAATCTTGTTGGTATGAAGAAGACTCTTGTGTTCTATAAAGGAAGAGCTCCAAAAGGTGAAAAAACTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCTACTCACCATCTTCCTAAAGCTGAAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAGAAACCTCAAATTTCTGGTCTTTTAAGGATAAACTCAATTGGTCATGATGATCTTTTAGATTATTCTTCACTTCCACCTCTCATGGATCCTTCATACACAAATGATGATTTCAAGGGAATTACAAATCAACAAATTTCATCAACTAAATCACAATCAGATGGATATTATCTTCCAAGCTTCTCCATCAACAATCAACAAAACCAATTTATCATGAAGCCAGAAGATAATAATTACCATAGAATAATTAACTATGATCATCATCATCATAATCAAGAGATTAATCCAACCATGAACAACTATACTTCCAATTCCAATTCCAACCAAACAAATCTCAACAACCCAATTGGAAACACACTCTCACAACCTCAAATCCGAATCCAAAATCCAAACTTGAATTACTTTATGTATCAAAATAGGATGATGCAAAATTCCATTCCAACAACATTTGGAAACAATAATGAGTGCAAAATGGAACAATTCTCTTCAAACCAATCACAAGATACAGGTCTTAGCAACGACACATCATCGGCCGTATCGGGAAGGAATAGGGCAATGTATGAAGATCTTGATGGTCCTTCATCAGTTGCACCTCTCTCAGATTTGCAAAGTTTTTGGGACTATTAA 1146 0.3525 MEEPIVVNKGEDQVLDLPPGFRFHPTDAEIIVFYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATVSGYWKATGKDKEIYHKGKSNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFATHHLPKAEKDEWVVSRVFHKNTDVKKPQISGLLRINSIGHDDLLDYSSLPPLMDPSYTNDDFKGITNQQISSTKSQSDGYYLPSFSINNQQNQFIMKPEDNNYHRIINYDHHHHNQEINPTMNNYTSNSNSNQTNLNNPIGNTLSQPQIRIQNPNLNYFMYQNRMMQNSIPTTFGNNNECKMEQFSSNQSQDTGLSNDTSSAVSGRNRAMYEDLDGPSSVAPLSDLQSFWDY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02620 381 FunFam NAC domain-containing protein 100-like 26 173 - -
Trre14g02620 381 ProSiteProfiles NAC domain profile. 17 169 IPR003441 GO:0003677|GO:0006355
Trre14g02620 381 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Trre14g02620 381 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Trre14g02620 381 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Trre14g02620 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02620 Trre-Chr14 25664756 25666457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02620 1 206 NAC Transcription Factor Family AT5G18270 69.484 7.20e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre14g02620 NAM 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02620 - - aprc:113861501 513.842