Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02612 ATGGATGTTTGCCAAAATGTATCAGTTTCTAGTGAGTCCAAACAAGATAAGCTCCTTAACCCTTCTTGCTCAAACCTCTCAAGTAGCCTTGATGACCTCTTTTCTACTCAGAACATGGAAGTGAATGTTGAAATGGAATGGCTTTCAGTGTTTGTTGAAGATTGTTTTTCAAGCCCACAAAGCTGTGTCTTGTTACCCTCAAATGTTGAAAACAACACGAACACAATCACATCAAAACCTTCAAACACAACAAAGAAACAACCAAATGAGTCAGCAATGCAAAATTTCACAGTACCAGGGAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCACCAAGAAGACCAAAAAACCCTTTAAGCATTTTATCAAACACCTTAAACCCACAAAATGAATCACTTTGTTCTGACCCACCTCTTCTGAAACAAACCTATTGGTTAGCTGATAGTGAACTCATTGTACCTAAAGATGTAACAAAAGATGATGATGATTGTGAAGTAATTGTGAAAAAGGAAAGGTTTGATTTTGAGAATAATAATAATAATAATGATGTTAGTGTTAACAACAATGGTTCAAATTCATCAATTCCAACAAGGAGGTGTACACATTGTTTGTCACAAAAGACACCACAATGGAGGGCAGGCCCATTAGGCCCAAAAACATTATGCAATGCTTGTGGTGTTAGGTACAAATCTGGAAGGTTATTGCCTGAGTATAGGCCTGCTAAGAGTCCTACTTTTGTCAGTTATTTGCATTCAAATTCACATAAGAAAGTTATGGAAATGAGGATGAATGTTGTATCTTCTAATCCTAGTGAGTGA 819 0.3675 MDVCQNVSVSSESKQDKLLNPSCSNLSSSLDDLFSTQNMEVNVEMEWLSVFVEDCFSSPQSCVLLPSNVENNTNTITSKPSNTTKKQPNESAMQNFTVPGKARSKRKRLSAPRRPKNPLSILSNTLNPQNESLCSDPPLLKQTYWLADSELIVPKDVTKDDDDCEVIVKKERFDFENNNNNNDVSVNNNGSNSSIPTRRCTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVVSSNPSE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02612 272 SMART GATA_3 194 248 IPR000679 GO:0006355|GO:0043565
Trre14g02612 272 MobiDBLite consensus disorder prediction 73 98 - -
Trre14g02612 272 ProSiteProfiles GATA-type zinc finger domain profile. 194 230 IPR000679 GO:0006355|GO:0043565
Trre14g02612 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 258 - -
Trre14g02612 272 MobiDBLite consensus disorder prediction 73 129 - -
Trre14g02612 272 Pfam GATA zinc finger 200 234 IPR000679 GO:0006355|GO:0043565
Trre14g02612 272 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
Trre14g02612 272 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
Trre14g02612 272 Gene3D - 192 263 IPR013088 GO:0006355|GO:0008270
Trre14g02612 272 FunFam GATA transcription factor 189 271 - -
Trre14g02612 272 PANTHER GATA TRANSCRIPTION FACTOR 24 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02612 Trre-Chr14 25513059 25514336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02612 43 262 C2C2-Gata Transcription Factor Family AT4G32890 41.593 1.78e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre14g02612 GATA 3.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02612 - - gmx:100786479 343.584