Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02610 ATGGCAATTGCACGCACTGGAGTCTACGTTGACGACTATTTGGAGTATGCAAACACATTACCCGCTGAACTTCAGAGACTTCTCAACACCGTTCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAAACAAGGCAGCAGACAAAGTACTGTATGGGGTTCTCATCTCATGGCTCAAAGAAGGGTAATCATAATCATAATCATAATTATAATAGCAATTACACGAACGAAGATGACGATGCTTCCATTGAGAAAATGCGAAAAGAAATTGAAGCAAATCAGGATAGTGCATTGAGTTTATGCACTGAGAAGGTTTTGTTGGCACGGCAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAGCTTTGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACAAGATGAACCAGCCATTCTTCCTCCATTACCTATTGTCCCTAAACCTGAAAAGCGTAGGTACGCATACGGTACACCTCAATCGAAGAGACTTGATTACAGGGAAAGAGACTGGGATAGAGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAAGAAGGACTATGTGACCCCTATGGATATTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGGGAATGGTTCCACTATTCATGTGTCGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACTACCACATTGTCAATGA 804 0.4179 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHNHNHNYNSNYTNEDDDASIEKMRKEIEANQDSALSLCTEKVLLARQAYELIDSHVKRLDEDLNSFAEDLKQEGKIPQDEPAILPPLPIVPKPEKRRYAYGTPQSKRLDYRERDWDRDFELMPPPGSHKKDYVTPMDIDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPHCQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02610 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 262 IPR013083 -
Trre14g02610 267 CDD ING_plant 19 127 - -
Trre14g02610 267 Pfam PHD-finger 213 261 IPR019787 -
Trre14g02610 267 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 129 IPR024610 -
Trre14g02610 267 Coils Coil 24 44 - -
Trre14g02610 267 SMART PHD_3 213 261 IPR001965 -
Trre14g02610 267 FunFam PHD finger protein ING 205 263 - -
Trre14g02610 267 SMART ING_2 9 130 IPR024610 -
Trre14g02610 267 ProSiteProfiles Zinc finger PHD-type profile. 211 263 IPR019787 -
Trre14g02610 267 PANTHER INHIBITOR OF GROWTH PROTEIN 2 261 IPR028651 -
Trre14g02610 267 Gene3D - 5 128 - -
Trre14g02610 267 CDD PHD_ING 213 260 - -
Trre14g02610 267 SUPERFAMILY FYVE/PHD zinc finger 189 262 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02610 Trre-Chr14 25495494 25497663 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre14g02610 ING 1.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02610 - - lang:109339676 489.96