Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02581 ATGGAAATTCAATTTCAGCAACCAAACATGCAGAATCAGAAATCAGGAATTTCTGTAACAAACAAAGGAGGAAAGTTCAAAGGAAGAAACAGAAACAGCAATAACACGAACAAATTTGTTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCTGCTCGAGCTTACGATGAAGCCGCGTGTCTTCTTCGAGGTTCTAACACTCGAACCAACTTCATTACTCATGTCTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGACAAAAAAAAGGAAGATGCTGTTGCTTCTTCTACAAGTAACAGCAATACTAGTAATGCTAGCACTATTAGTAATACTAATGTAATTACAAGCAATGATGATAACAAGGAAAGTGCTCTTTCAAGTGAAGATACTCAGAAAACAGAACTTTTTGAGAATGTTTATAAACCCGATTTGAGCAATTTCAAGGAGGATTTTGAGTCAGGTTCGAAATCCAACATTTCGTGGGGTTTCGGACCTGTTTTTGATCATTTTCCTTTTGCTCAATTATTAGATATATCTAAGACTAATGGCATGAATGATGAATCTAACTTGGAACTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAGTACATGGAAACTGTTCATGAATCCAATGAAGCCTTATGGGATCTTCCACCTTTGTGCTCATTGTTCTGTTAA 816 0.3713 MEIQFQQPNMQNQKSGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKKKEDAVASSTSNSNTSNASTISNTNVITSNDDNKESALSSEDTQKTELFENVYKPDLSNFKEDFESGSKSNISWGFGPVFDHFPFAQLLDISKTNGMNDESNLELSEFERMKVERQISASLYAINGVHEYMETVHESNEALWDLPPLCSLFC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02581 271 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Trre14g02581 271 MobiDBLite consensus disorder prediction 113 162 - -
Trre14g02581 271 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 237 - -
Trre14g02581 271 MobiDBLite consensus disorder prediction 126 153 - -
Trre14g02581 271 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Trre14g02581 271 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Trre14g02581 271 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Trre14g02581 271 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02581 Trre-Chr14 25061564 25062379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02581 25 271 AP2-EREBP Transcription Factor Family AT5G19790 43.243 1.39e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g02581 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02581 K09286 - gmx:100796898 380.563