Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g02568 | ATGTTCAAGAGCAACACTTTTTGTGCAAATATGGCAGATCCTTCTTCTTCCATCTATGAGTTCTTCAAGCAACAACAACCATCTTCATCATCAAGAGCTGCTAGAAGATCCTCTTCATCTTCAACAACAAGAACTTTTCAATGCCATTTTTGTAACAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTCAAAGAGCTGCTGCTAGAACAAGAACCATCAACCTTAATATCAACAACACCATCAATGGTATTGTCTCTTTCTCATCACCACAACAACAACAACCACCACCTTCATTTTCACTCATTGAATGA | 333 | 0.3844 | MFKSNTFCANMADPSSSIYEFFKQQQPSSSSRAARRSSSSSTTRTFQCHFCNRKFYTSQALGGHQNAHKLQRAAARTRTINLNINNTINGIVSFSSPQQQQPPPSFSLIE | 110 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g02568 | 110 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 48 | 68 | IPR013087 | - | |
Trre14g02568 | 110 | SUPERFAMILY | beta-beta-alpha zinc fingers | 43 | 72 | IPR036236 | - | |
Trre14g02568 | 110 | Gene3D | Classic Zinc Finger | 22 | 101 | - | - | |
Trre14g02568 | 110 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 23 | 94 | IPR044246 | GO:0009788 | |
Trre14g02568 | 110 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Trre14g02568 | 110 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 46 | 73 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g02568 | Trre-Chr14 | 24953206 | 24953538 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g02568 | 11 | 102 | C2H2 Transcription Factor Family | AT5G14010 | 39.474 | 6.85e-14 | 62.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre14g02568 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g02568 | - | - | tpra:123891679 | 104.375 |