Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02568 ATGTTCAAGAGCAACACTTTTTGTGCAAATATGGCAGATCCTTCTTCTTCCATCTATGAGTTCTTCAAGCAACAACAACCATCTTCATCATCAAGAGCTGCTAGAAGATCCTCTTCATCTTCAACAACAAGAACTTTTCAATGCCATTTTTGTAACAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCACAAACTTCAAAGAGCTGCTGCTAGAACAAGAACCATCAACCTTAATATCAACAACACCATCAATGGTATTGTCTCTTTCTCATCACCACAACAACAACAACCACCACCTTCATTTTCACTCATTGAATGA 333 0.3844 MFKSNTFCANMADPSSSIYEFFKQQQPSSSSRAARRSSSSSTTRTFQCHFCNRKFYTSQALGGHQNAHKLQRAAARTRTINLNINNTINGIVSFSSPQQQQPPPSFSLIE 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02568 110 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Trre14g02568 110 SUPERFAMILY beta-beta-alpha zinc fingers 43 72 IPR036236 -
Trre14g02568 110 Gene3D Classic Zinc Finger 22 101 - -
Trre14g02568 110 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 94 IPR044246 GO:0009788
Trre14g02568 110 MobiDBLite consensus disorder prediction 22 44 - -
Trre14g02568 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02568 Trre-Chr14 24953206 24953538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02568 11 102 C2H2 Transcription Factor Family AT5G14010 39.474 6.85e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g02568 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02568 - - tpra:123891679 104.375