Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02525 ATGCCAGTTCCTGCTCATGTCACACCTTTGCTTCAGATTGATAACACTAAGTCAGATTGGTTTATCAAAGTAAGAGTAGTAAGAATTTGGAATGTTAGAAGTATTATCGATCAGAATAAGATTAATGAGATTCAACTGATTTTTATTGATCAAGAGGGTTCAAAAATTCAAGGTACTGTCCCTGCTCACAGTATCGATCGTTTGGGCAGTCTCTTCTATGAAGGTGGTGTATACCTTATGGGAAATTTCCAGGTCAAACGTAACGTTGGCAAGTGCATGATTGCTATGAATCAGTTCAAGTTAGTTTTCATCACAAACACTGTGGTTATCCCATCACAGAGTTTAGTGATTCCTCACTATTCTCTGTTGATATTTTCATCTCAAAAGATTAGAAACTATGAAAATGGTTTAAGTCACTTGATTGATGTCATTGGAGTTGTTACTGATATTAAGGCAAAACAATCTCAGGAAATCAATGTTGTCAAAGTTACGTTAAATGATAAGAGAGGGACTTGTGAGTGTATTCTGGTTGGAATGTATGTTGATAAATTGAAGACACTGATGTCTGGATTACTCTCTGATGCACCCGTTCTTCTCTTACAATTTGTTCAAATCAAGAACAAAGGAGATTTTGTGTATGTTGAAAGTGTGGAAAATATCAGTAGAATTTCCATGAACCCCCCTATTGTTGAGGTTGATCTTTTTAAGAATGAGATGGGAATCATTGATTCCTCATATCACTTGGCTGACAAAGACTGTTATTCAACTTCTAAACCATGCAAAGAGTTAGAGTTCAATGGGTTGTATCCTCACAAAACTCTCAATGATTTTATCCGCACAATGGAAGACGGATTGTTTGTTTTATTTTGCAAAGTTGTTGGTATTTTCAAACTTAGTCAGTGGTTTTATCCTGTCTGTCATTGCGGTGTTTTTCTGGAGTATGCAGGCGGATCTTATTATTGCGCTTGTTGCCATATTACTGTGTTCAGCGCTTCAGCTAGGTGCAAATTTCAAATTGGTATTCAAGATGCGACCTCTGCTGCTCTTTTGCCAATATCCCAAACTGTGCTTCATGGAATTGGATTATTAAAAAACAATTCATCTTCTTCTGCTTTGAGTGGTAGTGTTGAAAATCCATTGATTGGAAAGATGTTGCTGTTAATTGCAAAAAAGAATCGAAGGTTTGATGATTTGTCTGATAATGCAGTCGAAGTAATTCGTGTTACAGATGAAGCTGGTATTGTTAACCAGTATCACTTGACTGGAAACAATTATACTCCAACAAAGTGTATCTTAGAGACTCCTTTTGGGGAATTAACTTCGCCGATAATTATTCCTCCAGTTGTATCTCCTGTTCCAGAGTCTGTTGGTGCTGGAAAGTTGCAGCTAGATGAAAATGCATTCCAGAAAATTCTGGACGATTCTGCTGCGCAGTACCATAAAAAATATAACGAGTTCAAATTGCGCAATAACAGTGGCGCGTTTGCTGGTGGTTTCAATGATGATGCATCCTCTTCCAACATGATTTAG 1530 0.3719 MPVPAHVTPLLQIDNTKSDWFIKVRVVRIWNVRSIIDQNKINEIQLIFIDQEGSKIQGTVPAHSIDRLGSLFYEGGVYLMGNFQVKRNVGKCMIAMNQFKLVFITNTVVIPSQSLVIPHYSLLIFSSQKIRNYENGLSHLIDVIGVVTDIKAKQSQEINVVKVTLNDKRGTCECILVGMYVDKLKTLMSGLLSDAPVLLLQFVQIKNKGDFVYVESVENISRISMNPPIVEVDLFKNEMGIIDSSYHLADKDCYSTSKPCKELEFNGLYPHKTLNDFIRTMEDGLFVLFCKVVGIFKLSQWFYPVCHCGVFLEYAGGSYYCACCHITVFSASARCKFQIGIQDATSAALLPISQTVLHGIGLLKNNSSSSALSGSVENPLIGKMLLLIAKKNRRFDDLSDNAVEVIRVTDEAGIVNQYHLTGNNYTPTKCILETPFGELTSPIIIPPVVSPVPESVGAGKLQLDENAFQKILDDSAAQYHKKYNEFKLRNNSGAFAGGFNDDASSSNMI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02525 509 Gene3D - 268 355 IPR012340 -
Trre14g02525 509 CDD RPA1_DBD_A_like 22 109 - -
Trre14g02525 509 Gene3D - 117 241 IPR012340 -
Trre14g02525 509 SUPERFAMILY Nucleic acid-binding proteins 6 113 IPR012340 -
Trre14g02525 509 Gene3D - 5 111 IPR012340 -
Trre14g02525 509 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Trre14g02525 509 SUPERFAMILY Nucleic acid-binding proteins 129 239 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02525 Trre-Chr14 24371381 24373670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02525 3 345 Core DNA Replication Machinery Family AT5G45400 21.833 3.82e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02525 - - tpra:123886453 381.719