Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02512 ATGGTTAGGCATCGCATCACCACCAAGGGGCCATTGCACATGGTGTACTCTCTGAGAGAGAAATTAAGAATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAAGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTCCTGATGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCGGGAAGAACAGACAATGAGATAAAGAATTTTTGGAACACGCACTTGAAGAAACGTCTAAAAAGCATGGGGATTGATCCGAAAACACATGAGCCAGTAGCTTCATCAACAAGTTACCCCAATCACAAATCACATGCTTCCATTTCGACACGCCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCACACTTCAACAACATTGCAAAAACTGATTCTTGTTCCGATTACTTTCTTCGTATATGGAATTCTGAAGTTGGAGATGCATTTCGCAATGTTAACAAAATTACTAGTTGTTGTGAGAGTCCTATTTCTGCAGGATCATTATCTACCAACAAATGTGACTCTGTTACAGCAGAGTTAGCCTCTAATAATCCAATAAGCAATAGTGTGAAAGAAGAGTTTGAGTGGAAAAACTATAAGTTTTGTGCTGAAGATGTGATTTTTGGATCTGATTCATCAAGCTCTAATGATATGGATGATTCATCAGACACTGCTTTCCAGCTCTTGTTAGATTTTCCTATGAACACTGACATGAGCTTCTTGGAAAATTCTTTTGCTTTTTCCCTCTAA 960 0.4094 MVRHRITTKGPLHMVYSLREKLRMGRTPCCDKKGLKKGPWTAEEDEILANYINKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPDEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSTSYPNHKSHASISTRHMAQWESARLEAEARLSIESSHFNNIAKTDSCSDYFLRIWNSEVGDAFRNVNKITSCCESPISAGSLSTNKCDSVTAELASNNPISNSVKEEFEWKNYKFCAEDVIFGSDSSSSNDMDDSSDTAFQLLLDFPMNTDMSFLENSFAFSL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02512 319 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Trre14g02512 319 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Trre14g02512 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 24 269 - -
Trre14g02512 319 ProSiteProfiles Myb-like domain profile. 32 85 IPR001005 -
Trre14g02512 319 Gene3D - 93 167 - -
Trre14g02512 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Trre14g02512 319 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Trre14g02512 319 FunFam Myb transcription factor 34 91 - -
Trre14g02512 319 MobiDBLite consensus disorder prediction 144 167 - -
Trre14g02512 319 Gene3D - 34 91 - -
Trre14g02512 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Trre14g02512 319 FunFam MYB transcription factor 93 140 - -
Trre14g02512 319 SUPERFAMILY Homeodomain-like 34 132 IPR009057 -
Trre14g02512 319 SMART sant 36 87 IPR001005 -
Trre14g02512 319 SMART sant 90 138 IPR001005 -
Trre14g02512 319 CDD SANT 39 85 IPR001005 -
Trre14g02512 319 CDD SANT 93 136 IPR001005 -
Trre14g02512 319 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02512 Trre-Chr14 24260595 24264193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02512 24 315 MYB Transcription Factor Family AT3G61250 62.333 3.59e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g02512 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02512 K09422 - gmx:100800408 427.172