Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02480 ATGGCAATACAAAGAAACGGTTCTGTGAGTTCGGTTCGCGAAGTCGGGGGAGAAATTGAAGAGGAACCTAATACAACTGTGGTTGATGAGGCAATCTATGTTGCTGTGTCAAAGGATGTAAAAGAGAGTAAATTGAATTTGATATGGGCAATACAGAATTCTGGAGGAAAGAAGATCTGTATCCTCTTTGTTCATGTTCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCCGCAAGTTCATTGAAAGATCAGGAAGTCCAAGCTTTCCGGGAAATTGAAAGGAAAAACATGCATAAGACTCTGGATGAATATCTTCGCATCTGTCAGCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAAAGGAATTATAGAACTGATTTCCCAGCATGGAATCCGGAAGCTTATTATGGGAGCAGCTTCTGATAAGAATTATTCTAGGAGAATGATGGACCTCAGATCTAGGAAAGCCATCTATGTATGCGAACAAGCTCCAGCTTCTTGCCATATACAGTTTATCTGCAAAGGCCACCTTATACACGCAAGGGATCGTAGTTTAGATGAGCGGAACGTAGAGGTTGCATCTCCTTTGACGCCACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCTATTACACTGGGGCAGAATCATAGGTCAGATTCAAGTCGTTCTATTCAAGAGTTATTTCGCAGAGTGAGGTCTGCCAATGATGGACAGAGAGCAAGCATATCTTCTCCAAATGACACTGGGGGGTTTTCAACTCCATCTAACAGGCGAGGTACAGAAGTAAGTTCTGATGAATCCGACACGCTTTCAAGGACGAGTCCTTCAGGTTTGTCGACATTCTCTGATAGTGCAGTTGAACCAACACTAACCCCAGATTTGGTTGCCGAGAGCAGTATGAGTGCATTAGACTTGACTTTTAGTCGCCTGGATATAAAGGAAGATCTGCATCATTTATCGCCTCCAAGTGTCCTGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTTAGACGCGGGAAAGCTGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAGCTTCCGAAAGCTTATATACAGAGGAGTTGAATCAGAGGAAAATGGCGGAGGAAGAACTAAAAAAGGAAAAAGAAGAACTTGAGAGTGTGATGAGGCAGAGAGACAAAGTTAATGAAGAACTCCAACTTGCCCTGGATCTGAAGTCATCACTAGAGAGTCAACTTGCATCGTCTGAAGTTATGATACAGGAGTTGGAACAGAAGATTATCTCGGCTGTGGAACTGTTACAAAGCTACAAGAATGAACGAGATGAATTGCAGATGCAACGCGATAATGCATTGAGAGAGGCTGAAGATCTGAGGAAAAAACAAGGCGAGGGCTCGAGCTCCCATGTTGCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTGAAGAAGCAACAGGTAATTTTAATCCATCCCTAAAGATCGGAGAAGGTGGATATGGAAATATATTCAAAGGTCTCCTCCGTCACACCGAAGTCGCTATAAAAGTGTTGCATGCCAACAGCATGCAAGGACCCTTGGAATTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCATCCCAATCTAATCACTCTTATAGGTGCCTGTCCAGAGTCTTGGTCTCTTGTCTATGAGTATTTACCAAATGGAAGTCTTGAAGACCGTCTTGCCTGCAAGGATAACACATCTCCATTATCATGGCAAACGCGGATTCGTATTGCGGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTACATGGTGACTTGAAACCTTCCAATATCATCCTAGATGCAAACCTTGTCAGTAAGCTTAGCGACTTTGGAATCTGTCGCATATTATCAAATTACGAGAATTCTAGTACTAATAACACGCAGTTTTGGAAAACCGATCCAAAAGGGACTTTTGTCTACATGGATCCGGAATTCCTTGCTTCCGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACCGGGAGACCAGCTTTGGGAATAACTAAGGAAGTGAAATATGCTGTAGATACCGGAAAGTTGACATCTTTATTGGATCCTTTGGCTGGGGACTGGCCATTTGTGCAGGCTGAGCAGTTGGCTCGCTTGGCTTTGCGGTGTTGTGAGATGACTAGGAAGAGTCGGCCGGACCTTCATTCAGATGTCTGGAGGATATTGGATGCAATGAGGGCTTCTTCCGGAGGCACAAACTCCTTTGGTCTAAGTTCGGAAGGGCCTCACCAACCTCCTTCATATTTTATCTGTCCAATATTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCGGAGGCTATCCGAGGATGGCTCGACAGTGGTCATGACACTTCACCAATGACAAATAGTACGCTTTCACATCAGAATCTTGTCCCCAACCGCGGTCTTCGCTCCGCAATCCAGGATTGGCTTCAAAGCCACTGA 2580 0.438 MAIQRNGSVSSVREVGGEIEEEPNTTVVDEAIYVAVSKDVKESKLNLIWAIQNSGGKKICILFVHVPATMIPLMGAKFPASSLKDQEVQAFREIERKNMHKTLDEYLRICQRMGVRAEKLHIEMDNIEKGIIELISQHGIRKLIMGAASDKNYSRRMMDLRSRKAIYVCEQAPASCHIQFICKGHLIHARDRSLDERNVEVASPLTPQVPNSVRSLRSQSITLGQNHRSDSSRSIQELFRRVRSANDGQRASISSPNDTGGFSTPSNRRGTEVSSDESDTLSRTSPSGLSTFSDSAVEPTLTPDLVAESSMSALDLTFSRLDIKEDLHHLSPPSVLAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKASESLYTEELNQRKMAEEELKKEKEELESVMRQRDKVNEELQLALDLKSSLESQLASSEVMIQELEQKIISAVELLQSYKNERDELQMQRDNALREAEDLRKKQGEGSSSHVAQLFSEFSFSEIEEATGNFNPSLKIGEGGYGNIFKGLLRHTEVAIKVLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTSPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSTNNTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMTRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02480 859 Coils Coil 376 473 - -
Trre14g02480 859 ProSiteProfiles Protein kinase domain profile. 501 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g02480 859 MobiDBLite consensus disorder prediction 244 296 - -
Trre14g02480 859 SMART Ubox_2 792 855 IPR003613 GO:0004842|GO:0016567
Trre14g02480 859 FunFam receptor-like protein kinase FERONIA 465 573 - -
Trre14g02480 859 SUPERFAMILY RING/U-box 783 858 - -
Trre14g02480 859 SUPERFAMILY Protein kinase-like (PK-like) 477 759 IPR011009 -
Trre14g02480 859 Gene3D Transferase(Phosphotransferase) domain 1 574 778 - -
Trre14g02480 859 CDD RING-Ubox_WDSUB1-like 790 845 - -
Trre14g02480 859 Gene3D HUPs 31 177 IPR014729 -
Trre14g02480 859 ProSiteProfiles U-box domain profile. 788 859 IPR003613 GO:0004842|GO:0016567
Trre14g02480 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 859 IPR013083 -
Trre14g02480 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Trre14g02480 859 ProSitePatterns Protein kinases ATP-binding region signature. 507 528 IPR017441 GO:0005524
Trre14g02480 859 Pfam U-box domain 790 859 IPR003613 GO:0004842|GO:0016567
Trre14g02480 859 CDD STK_N 32 184 - -
Trre14g02480 859 Gene3D Phosphorylase Kinase; domain 1 471 573 - -
Trre14g02480 859 MobiDBLite consensus disorder prediction 247 296 - -
Trre14g02480 859 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 157 - -
Trre14g02480 859 PANTHER OS02G0152300 PROTEIN 32 854 - -
Trre14g02480 859 Pfam Protein kinase domain 505 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g02480 859 SMART serkin_6 501 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02480 Trre-Chr14 23889839 23896549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02480 19 859 U-box Gene Family AT2G45910 56.383 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre14g02480 Pkinase 3.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02480 - - gmx:100807515 1347.41