Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02476 ATGGATAAAGAGGAAGCCGCACAAATCCCCAGAAGAACGACAAGGTTGTTATCTTCAACATCCACTTCAAATATTAAACCTGCATCAAAAGAAAAAAACGGCCTTGAATCCCTAACAATCAATGACCTTTTGGTCGGAGGAGACCCTAGTAGCCTAGATGATATAATTTCCAGTTTTCCTGGTAGAAGTAGTCAGATTCATGAGATTGTGCGTCTTTTAGGACCTTTGAATTCACCGATACTTCCTGTGTTTTTGTACGGAGGTGCTTCAACCGGAAAAACCAGTATCATTCTTCAATTATTCAAACATCTCCAAAGGCCTCTTGTTTATTCTAGTTGTAGGACGTGTTATAACCAACGTATCTTGTTCGAGTCTGTTCTAAATCAGTTACTTCTCCATAGAAAAAATGCTGCCAATTGTTATACAAATGCAAAGCGTTGTGAAAGACCATCCGATTTTATCAATTTTCTTCGCGAAGCATTGACCAGTGTTATAGACAATCTGAAGGTGAAATCAGAAAAATCAATCTCAGAAAAGAATATACATGGGGGAATGGGAAATATGATCTACTTGGTATTTGACAATTTTCATCTTGTTCGAGATTGGGACAAAAGCTCGACGATATTGCCCTTACTGTTTAATCTCTATGATATGCTAAAGATGCCCGAGGTTGGTCTGATTTTCATCAGCAGTACTTCACCAGATACCTTTTACTCTACTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCGGATTACACAGAAGGTGATATGCGTCAAATCTTATTGAGAAACCAAGCAAACCAGAAGTTGTATTCCTCATTTCTCGATGTAGCTCTGAGGCCTTTCTGCAGAATTACCAGGCAAGTTGGTGAATTGTCTTCTGCATTAAAGCCATTGTTTGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGTTCCTAGTGAAGACATGAAGAGGAGGCTATTCAGTCACATCAAGCCTCATATTGCTTCCTCTCTGAATGATGTATTTAAGGTTTCATCTCCTCCTTCAAGTGAAGCTGAGAGTGGTAAAGAGACAAAGCTTAAGGGGAATCTGAAGAGATTGGAGAGATCTGAGGAAATCGGGGATCTTGATTTTCATATGTCGACCAGTGCAAAGTATCTTCTTATTTCAGCATTTCTTGCCTCCAGAAACCCTGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGTAAGAGGAAGGCCACTGAGAAAGCGCTCGAGAAGAAGGAAATGTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCACTGGAGAGATTGATAGCCATCTTTCAGTGTATTGTTTCTGTTGGAGAAGACCCATCTGATGAAGAGGAACAAAACAATGAAGAATTAGGAGCTCAATGTGGCAGCGGTTCACTGATGTCTGATGTTCTTTTGCAGCTATCCACTCTCTGCAATGCTAATTTTATTTTCAAAGGAAAGAGTTGTCCAATTGAAGGCTCGACTCGGTATCGATCAATTATATCTGAAGACCTGGCTTTGAAGGTTGCAAGGAGCCTAAAGTTCCCACTGTCAAAGTATCTGTACAGAAGTTAG 1629 0.3996 MDKEEAAQIPRRTTRLLSSTSTSNIKPASKEKNGLESLTINDLLVGGDPSSLDDIISSFPGRSSQIHEIVRLLGPLNSPILPVFLYGGASTGKTSIILQLFKHLQRPLVYSSCRTCYNQRILFESVLNQLLLHRKNAANCYTNAKRCERPSDFINFLREALTSVIDNLKVKSEKSISEKNIHGGMGNMIYLVFDNFHLVRDWDKSSTILPLLFNLYDMLKMPEVGLIFISSTSPDTFYSTNMGYVEPIPIYFPDYTEGDMRQILLRNQANQKLYSSFLDVALRPFCRITRQVGELSSALKPLFEKYCEPLSDKGKGVVPSEDMKRRLFSHIKPHIASSLNDVFKVSSPPSSEAESGKETKLKGNLKRLERSEEIGDLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKATEKALEKKEMLEEELLMKGPGTFPLERLIAIFQCIVSVGEDPSDEEEQNNEELGAQCGSGSLMSDVLLQLSTLCNANFIFKGKSCPIEGSTRYRSIISEDLALKVARSLKFPLSKYLYRS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02476 542 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 50 541 IPR020796 GO:0000808|GO:0005634|GO:0006260
Trre14g02476 542 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 539 IPR047088 -
Trre14g02476 542 FunFam Origin of replication complex subunit 5 59 240 - -
Trre14g02476 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 326 IPR027417 -
Trre14g02476 542 MobiDBLite consensus disorder prediction 12 30 - -
Trre14g02476 542 Gene3D - 59 240 IPR027417 -
Trre14g02476 542 Pfam AAA ATPase domain 59 215 IPR041664 -
Trre14g02476 542 MobiDBLite consensus disorder prediction 1 30 - -
Trre14g02476 542 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02476 Trre-Chr14 23823932 23826102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02476 3 541 Core DNA Replication Machinery Family AT4G29910 59.074 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02476 K02607 - gmx:100782175 810.061