Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02468 ATGGGATTGGACTCATTGCAGCAGCAGCAGCAGATGATAGGTTCTTCGAGACAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAGTGAAGCAGTGCTGGCATATCAAGCAGGGCATCAAGGAGTATTTGCGAATAACAATTACTCATCTACTGCTATGCAATTGCCTCAGCAGTCTCGGAAATTTATTGATTTAGCTCAGCATGGACTCAACCAGGGTCAAAGCATTGAGCAACAAATGTTAAATCCTGTTCAACAAGCTCATTATCAATATGCTCTCCAGAATTCTCAACACAAGTCTACTTTGGCAATGCAGCAATCTAAAATCGAAATGTCAGGCCCCACGTCTGTTAAGGATCAAGAAATGCGAATGGGGAATTTTAAATTGCAGGACCTTATGTCTATGCAGGCAATGAATCATGGCCAAGGATCATCTAGGAATTCATCTGAACATTTTTCTCTTGGTGAAAAGCGGATGGAGCAAGGGCATCAGCTAGCTCCTGATAAGAAGAATGAAGGAAAGCAACCAACTCAGGGACCAGCCATTGGACACTTGATGCCGGGGAATATTATAAGGCCTGTGCAAGCACCAGCAACTCAGCAGAGCATCCCAAATGCTTTGAACAACCAAATTGCTATGTCTGCTCAACTCCGAGGTATGCAGGCATGGGCGCATGAACGGAACATTGATCTATCACAACCTGCTAATGCTAACTTAGTGGCTCAGTTCATTCCCTTGATGCAATCAAGAATGGTTCAACAACAAAAGGAAAACAATACTAACATTGGTGCTCAGTCATCTTCTGTCCCCGTTTCAAACCAGCAGGTTACTTCTCCGGCAGTTGCAAGTGAGGGATCTGCTCGTGCTAATTCATCTAGTGATGTGTCTGAACAGGCAGTTTCTGCGAAAGCCAAACAGACAGCTCCACCCATCCATTTGGGCTTACCCATCAGTGCTGGTGTGGCTAGTAATTCCAGTGACACGGCAGTGCAGCAATTCAGTCTTTATGGTAGAGATGCTCAAGGATCTTTAAAGCAATCCATTGTAGTTGGAAATGGAATGCCTTCTATGCATCCACAGCAGTCTTCTGCAAACATGAACTTAGGTGCAGATAGTTCTTTGAATCCAAAAGCTTCATTATCTGGATCTGGTCCAGAACCTGCAAAAATGCAGTACATCAAGCAATTAAACCAACATGCTTCCCAGGTAGGAGGGCTAACAAAGGAAGGGGGCACTGGAAATTACACCAATCCTCAAGGAGCACCGTCTCAGACGCCTCAAAAAGTAAATGGTTTTACCAAGCATCAGCTTCATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACACTTCCCCAAGAACTTCTTCAGGCCATTATTCCACCGCCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGCAGGAGGACAGAATCAAGACAAATCTGTTGGAAATACTGTGGCAGAACAACCAAGGCAGAATGAATCCAATGCCAAGGATTCACAACCTATCACATCCATTGTTGGAAATTCTTCAAAGCAGGAAACTTTTGTAAGAGATCAGAAATCCACTGGAGCAGCAGTTCATATGCAAGCTACGCCTCCTGTGACAAAGGGCTCTGCTGGAAAGGAAGAGCAGCAATCCGTTGAATGCTTTGCTAAGTCAGACCAGGAAAGTGAACATGGGATTAACAGAGCTCCTGTTAGAAATGAGTTGGCAATAGACAAGGGAAAGGCCATTGCCTCCCAGGCTTCGGTAAGTGACACTGCACAGAGTAATAAACCTGCACAATCAAGCATTGTTGCTCAGCCAAAGGATACAGGACCCACCAAAAAATATTATGGGCCCCTATTTGATTTTCCTTTCTTCACTAGGAAACAAGATTCCTTTGGGTCATCAATGATGGCAAATAACAGCAATAATTTGTCACTGGCATATGATGTAAAAGAGCTTCTTTATGAGGAGGGCATGGAGGTCTTTAACAAGAGAAGGACGGAGAATTTAAAGAAGATTGAAGGATTACTTGCGGTAAATTTAGAGAGAAAAAGAATTAGGCCAGATCTTGTCTTGAGGTTGCAAATTGAAGAGAAAAAACTCCGCCTTTTAGATCTTCAGGCACGTTTAAGAGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGCAAGTTTGTTAGGCTGTGTGAACGACAGCGGGTAGAACTCGCTAGACAAGTGCAGGCATCTCAGAAGGCTTTTAGGGAGAAGCAACTGAAATCTATATTCCAATGGCGCAAGAAGCTTCTTGAAGTTCACTGGGCCATTCGTGACGCTCGTACTGCTCGCAACAGAGGGGTTGCCAAATATCATGAGAAGATGTTGAAAGAATTCTCGAAACATAAGGATGATGACAGGAACAAGAGGATGGAGGCCTTAAAAAACAACGATGTTGACAGATATAGGGAGATGTTACTGGAGCAACAAACTAGCCTTGCAGGTGATGCTGCGGAGAGATACAATGTACTTTCAACATTCTTAACCCAGACTGAAGAGTATCTTCAAAAATTAGGAAGTAAGATAACTTCTGCCAAAAATCAACAGGAAGTGGAAGAGGCAGCAAAAGCTGCAGCAGCTGCAGCACGATTACAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCGGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCAAAAGATGGCTCGTCTTCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTAAATGAAAAAGTTTTTAGGCAACCATCAATGTTGCGGGCTGGAACACTGAGAGAGTATCAGATTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCTGATGAGATGGGTCTTGGCAAAACAGTCCAGGTTATGGCGTTAATTGCTTACTTAATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATAGTTCCAAATGCCGTTTTGGTTAACTGGAAGAGTGAATTACATACATGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAACAAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTCACTACTTATGAGTTCATCATGTTTGACCGAGCAAAGCTTTCAAAAATTGATTGGAGGTATATCATAATTGATGAAGCTCAGAGAATGAAGGATAGAGAGTCAGTTTTAGCTCGTGATCTTGATAGATATCGGTGTCACAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTAAATCTACTTCTTCCCGAGGTTTTTGACAATAAGAAAGCCTTCAATGATTGGTTCTCAAAACCATTTCAAAAGGAAGATCCCAATCAAAATGGAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAGGTTGAAGGCTCGCTACCTCCAAAGGTATCCATAGTTTTACGATGTAGAATGTCAGCCTTCCAGAGTTCCATTTATGACTGGATTAAATCGACCGGAACCCTTCGTCTTAATCCTGAGGAGGAGAAACGTCGGATGGAGAAAAGTCCGCTCTACCAGGCAAAACAGTATAAAACTTTAAATAACAGATGCATGGAGCTACGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTTAGTGACTTATCTAAAGATTTTATGGTAAAATGTTGTGGGAAATTATGGATGCTGGATAGGATTCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTGCTGTTCAGTACCATGACAAAACTCCTAGACATATTGGAAGAGTACCTGCAATGGCGAAGACTTGTGTACAGAAGAATTGATGGTACAACAGCTTTAGAAGATCGTGAATCAGCTATAGTGGACTTCAATAGCCCTAATTCGGACTGTTTCATCTTCTTGCTTAGTATTCGGGCCGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGATACAGTTATCATTTATGATCCTGACCCGAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGCATTGGACAAAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAATGGAGGCACTGTTGATATGGAGGATGAGCTTGCAGGTAAGGATCGTTATGTAGGATCCATTGAGAGCCTCATAAGGAGCAGTATTCAACAGTATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGACGTTTGACTTTGGAGACATTATTGCACGATGAAGAAAGGTGTCAAGAAACTGTGCACGATGTTCCTTCATTGGAGGAGGTAAATCGCATGATTGCTCGGAATGAAGAAGAAGTTGAATTGTTTGATCAAATGGATGAAGAAGAGGATTGGCTTGAGGAGATGACTCAGTATGATCAGGTGCCTAAGTGGCTTCGCGCCAGTACAAGAGAAGTGAATGCTGCTATTGCTGCTTCGTCAAAAAGACCATCAAAGAAGAACGCTTTATCGGGTGGTAATGTTGGCTTGGAATCCAATGAAGTGGGTTCTGAAAGGAGAAGAGGACGACCAAATGGAAAAAATCCTAATTATAAAGAGTTGGAAGATGAAATTGAAGAATCCTCTGAAGAAATATCTGAAGACAGAAATGAAGATTCTGCACATGATGGAAGGGAGATTGGAGAGTTTGAAGATGATGGGTATAGTGGGGCTGATGTAGCTCAATGCATGGATAACGATAAGTGGGAAGATGTTACTCCTGATGCTGAATATGAATTTCCTAGGTCTTTAGGAGGTGCTAGAAGCAATCATGTGGTTGAAGAAGGTGGTTCTTCGGCATCATCCGCAGAAGGTCAAAGATTGACACAAACAGTGTCACCATCAGTTTCTTCTCGGAAATTTGGTTCCCTGTCTGCACTAGATGCCAAGCCAAGATCGGTCTCAAAAAGGACGGGAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGGTGAGTCTCACATGCATCATCAACAGTCAGGAAGTTGGATTCATGACCGTGATGAAGGTGAGGAAGATCAAGTTTTGCAGAAACCCAAGATTAAACGTAAACGTAGTCTTCGTGTTCGGCCTCGTCACACCATGGAAAGGCTTGAGGATAAGTCTGGCAGTGAGATGGCATCTCTTAACCGTGGAGAATCATCTATTTTATCAGGCAATAAATATCCATTGCAAACAAGGATGGACCCAGAATCAAAACTATTTGGAGATTCCAGTTCCAGCAAGCATGATAAGAATGAATCAATATTAAAAAACAAGCGAAATTTACCTTCAAGGAAAGTAGCTAATGCATCCAAATCACATGTCCCACCTAAGTTCGGTCGTTTGAACACGGACGCTCCTTCAGAAGATAATGGTGAGCACTCTAGAGAAAGTTGGAAGGGGAAGCTTAACAATTTAAGTGGATCTTCATCTCATCGCACTAAAATGACTGAAATCATCAAGAGAGGGTGCAAAAATGTAATTAGCAAGCTCCAGAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTTTGCTGACAGATTTATGGAAGAGGATTGAGAATTCTGGGTTTGCTGGTGGTACTGGGAACAATCTCTTGGATTTAAGAAAGATTGACCAGCGAATTGATAGATTGGAGTACAGTGGAGTAATGGAGCTTGTTTTTGATGTGCAATTTATGTTGAAGAATGCAATGCATTTCTATGGGTACTCATACGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGACATCTTGAAAATTATATTTTCCGATATTGACTTCGGAGATGCAAGAAGTGCACTTTCTTTTTCTAGTCAAATTTCTTCCAGCACTGTAGCATCCCCAAGGGAAGCGACTGTTGGTCCAAGTAATAAGAGAAAAAGAGGGAAGACTGATACGGAGACTGATCCATTCCCTACACAAAAGACGCTGCAGCGTGGATCCACTTCCAACGGTGAAAGTGGCAGGATCAAAGTCCAATTACCACAGAAGGTATCAAGAACTGGAAGTGGTAGTGGCAGTGCCAGGGAGCAACTTCAACAAGATAGTCCTTCGCTGCTTGTTCACCCAGGTGAACTTGTTGTATGCAAGAAGAAAAGAAATGAGCGGGAGAAACCATCGGTAAAGCCAAGGATTGGATCAACTGGTCCTATTTCACCACCTAGCATGATTCCAGCTATGAGAAGTCCAACCTCAGGGTCAGGTTCTTCTACCCCTAGGGCTGGCAATGCACAGAGACCAAATGGGTCTGGCTTGTCAATTGGATGGGCAAATCCCGTGAAGCGGATGAGAACAGATTCTGGGAAGAGGAGACCAAGTCATATGTAG 6549 0.4254 MGLDSLQQQQQMIGSSRQSFQQQLLRKPEGSEAVLAYQAGHQGVFANNNYSSTAMQLPQQSRKFIDLAQHGLNQGQSIEQQMLNPVQQAHYQYALQNSQHKSTLAMQQSKIEMSGPTSVKDQEMRMGNFKLQDLMSMQAMNHGQGSSRNSSEHFSLGEKRMEQGHQLAPDKKNEGKQPTQGPAIGHLMPGNIIRPVQAPATQQSIPNALNNQIAMSAQLRGMQAWAHERNIDLSQPANANLVAQFIPLMQSRMVQQQKENNTNIGAQSSSVPVSNQQVTSPAVASEGSARANSSSDVSEQAVSAKAKQTAPPIHLGLPISAGVASNSSDTAVQQFSLYGRDAQGSLKQSIVVGNGMPSMHPQQSSANMNLGADSSLNPKASLSGSGPEPAKMQYIKQLNQHASQVGGLTKEGGTGNYTNPQGAPSQTPQKVNGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLQAIIPPPLDLQVQQPIHSAGGQNQDKSVGNTVAEQPRQNESNAKDSQPITSIVGNSSKQETFVRDQKSTGAAVHMQATPPVTKGSAGKEEQQSVECFAKSDQESEHGINRAPVRNELAIDKGKAIASQASVSDTAQSNKPAQSSIVAQPKDTGPTKKYYGPLFDFPFFTRKQDSFGSSMMANNSNNLSLAYDVKELLYEEGMEVFNKRRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELARQVQASQKAFREKQLKSIFQWRKKLLEVHWAIRDARTARNRGVAKYHEKMLKEFSKHKDDDRNKRMEALKNNDVDRYREMLLEQQTSLAGDAAERYNVLSTFLTQTEEYLQKLGSKITSAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSSVSKYYNLAHAVNEKVFRQPSMLRAGTLREYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDHRSKLFSQEVMAMKFNVLVTTYEFIMFDRAKLSKIDWRYIIIDEAQRMKDRESVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEDPNQNGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCRMSAFQSSIYDWIKSTGTLRLNPEEEKRRMEKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRNGGTVDMEDELAGKDRYVGSIESLIRSSIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERCQETVHDVPSLEEVNRMIARNEEEVELFDQMDEEEDWLEEMTQYDQVPKWLRASTREVNAAIAASSKRPSKKNALSGGNVGLESNEVGSERRRGRPNGKNPNYKELEDEIEESSEEISEDRNEDSAHDGREIGEFEDDGYSGADVAQCMDNDKWEDVTPDAEYEFPRSLGGARSNHVVEEGGSSASSAEGQRLTQTVSPSVSSRKFGSLSALDAKPRSVSKRTGDELEEGEIAVSGESHMHHQQSGSWIHDRDEGEEDQVLQKPKIKRKRSLRVRPRHTMERLEDKSGSEMASLNRGESSILSGNKYPLQTRMDPESKLFGDSSSSKHDKNESILKNKRNLPSRKVANASKSHVPPKFGRLNTDAPSEDNGEHSRESWKGKLNNLSGSSSHRTKMTEIIKRGCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGFAGGTGNNLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKNAMHFYGYSYEVRSEARKVHDLFFDILKIIFSDIDFGDARSALSFSSQISSSTVASPREATVGPSNKRKRGKTDTETDPFPTQKTLQRGSTSNGESGRIKVQLPQKVSRTGSGSGSAREQLQQDSPSLLVHPGELVVCKKKRNEREKPSVKPRIGSTGPISPPSMIPAMRSPTSGSGSSTPRAGNAQRPNGSGLSIGWANPVKRMRTDSGKRRPSHM 2182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02468 2182 MobiDBLite consensus disorder prediction 2100 2116 - -
Trre14g02468 2182 SMART helicmild6 1311 1395 IPR001650 -
Trre14g02468 2182 Coils Coil 1501 1521 - -
Trre14g02468 2182 ProSiteProfiles QLQ domain profile. 433 469 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g02468 2182 MobiDBLite consensus disorder prediction 141 186 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1708 1726 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 153 172 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1610 1627 - -
Trre14g02468 2182 Gene3D - 1194 1404 IPR027417 -
Trre14g02468 2182 Coils Coil 703 727 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1811 1829 - -
Trre14g02468 2182 FunFam ATP-dependent helicase BRM 945 1193 - -
Trre14g02468 2182 FunFam ATP-dependent helicase BRM 1194 1404 - -
Trre14g02468 2182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1285 1462 IPR001650 -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 358 382 - -
Trre14g02468 2182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 966 1131 IPR014001 -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 2043 2092 - -
Trre14g02468 2182 Pfam Helicase conserved C-terminal domain 1285 1395 IPR001650 -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 264 303 - -
Trre14g02468 2182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1188 1525 IPR027417 -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 2019 2182 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1552 1881 - -
Trre14g02468 2182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1184 IPR027417 -
Trre14g02468 2182 Gene3D - 1874 2004 IPR036427 GO:0005515
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1734 1755 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1669 1697 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1767 1781 - -
Trre14g02468 2182 Coils Coil 1593 1613 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 2028 2042 - -
Trre14g02468 2182 Pfam SNF2-related domain 957 1261 IPR000330 GO:0005524|GO:0140658
Trre14g02468 2182 FunFam Brahma1 1884 2007 - -
Trre14g02468 2182 Gene3D - 945 1193 IPR038718 -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 358 388 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1782 1797 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 406 431 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 2132 2159 - -
Trre14g02468 2182 Pfam QLQ 434 467 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g02468 2182 SMART QLQ_2 432 469 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g02468 2182 PANTHER SNF2/RAD54 HELICASE FAMILY 659 1669 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 481 536 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1559 1573 - -
Trre14g02468 2182 SMART bromo_6 1882 1997 IPR001487 GO:0005515
Trre14g02468 2182 MobiDBLite consensus disorder prediction 1576 1597 - -
Trre14g02468 2182 CDD SF2_C_SNF 1280 1405 - -
Trre14g02468 2182 MobiDBLite consensus disorder prediction 593 614 - -
Trre14g02468 2182 SMART ultradead3 950 1139 IPR014001 -
Trre14g02468 2182 SUPERFAMILY Bromodomain 1937 1999 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02468 Trre-Chr14 23736504 23747212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02468 1291 1402 RAD5 or RAD16-like Gene Family AT5G43530 43.750 2.14e-17 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g02468 SNF2_N 1.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02468 - - gmx:100811608 3301.53