Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02453 ATGAGCTTTCCCGTAGGGTACCCTGAAGTATCCGTCCCCAACCTCTTCCTCTACATTCTCTCTCTCCTCGCCTTTCTAAGATCCATAGCTATCACTTTCCTTTCCATCCTCCATCTCTCCGACATCCTCAACACCGATTTCTCCGCCGTCTCTTCACCTGAATCATCCTACCTCCACCGTTCCACTCTCTCTGCAATCCTCATCCGTGAATTCCTCCCTGTAGTCAATTTCAGTGACATCGCCGGAGACTCGCCGCCGGCAGTTGGATGTGTTGTGTGTTTAAATGAATTCGCCGGAGAAGAAGAGATCAGGTGTATGGCGAACTGTAGACATATTTTTCATCGGACGTGTGTTGACCGTTGGATTGATCTTGATCAGAAGACATGTCCACTTTGTAGAACGCACTTTGTACCTTATCATAAAATGGAAGATTATAATCAACGGTTATGGGCTGCTTCTTCATCTGATGATGATGATTATGATATTTCTCTTTTTTCTCAACATGATGACCACATTGCTACTTCTTCATTCTGA 534 0.4494 MSFPVGYPEVSVPNLFLYILSLLAFLRSIAITFLSILHLSDILNTDFSAVSSPESSYLHRSTLSAILIREFLPVVNFSDIAGDSPPAVGCVVCLNEFAGEEEIRCMANCRHIFHRTCVDRWIDLDQKTCPLCRTHFVPYHKMEDYNQRLWAASSSDDDDYDISLFSQHDDHIATSSF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02453 177 ProSiteProfiles Zinc finger RING-type profile. 90 133 IPR001841 -
Trre14g02453 177 Pfam Ring finger domain 90 133 IPR001841 -
Trre14g02453 177 SUPERFAMILY RING/U-box 89 147 - -
Trre14g02453 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 138 IPR013083 -
Trre14g02453 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 34 155 - -
Trre14g02453 177 SMART ring_2 90 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02453 Trre-Chr14 23581990 23582523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02453 1 155 C3H Transcription Factor Family AT1G63840 46.497 3.30e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02453 K16281 - gmx:100813224 202.601