Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02450 ATGTGTTCAAGTTCAACCTCAAGGTTATGCAGCTACCATGTGTTTTTGAGTTTTAGAGGAGAAGATACACGCAAAGGATTCACCGATCATTTGTGTGCTGCCCTTGAAAGAAAAGGGATCACAACTTTTAGAGATGACAAAGATCTTGAGAGAGGACAAGCCATTTCACAAAAGCTAATCAATGCAATTCAAGATTCTATGTTTGCTGTTACTATTCTCTCACCAGACTATGCTTCTTCCACTTGGTGTTTGGATGAGCTTCAAATGATCATGGAGTGCAGCAGCAATAACAACCTGCAAGTTTTGCCAGTCTTCTATGGTATGGATCCATCTGATGTAAGGCATCAAAGAGGTTGCTTTGAGGAAGCTTTCAAAAAACATCAAGCAAAATTTGGTGAACACAGTGACAGGGTTGAAAGATGGAGAGATGCTTTGACACAAGTTGCCAGTTACTCTGGATGGGACTCCAAGGGCCAGCATGAGGCATCACTAGTGGAAAACATTGCTCAACACATACATAGAAAGTTGGTACCTAAATTTCCATCTTGTACAGAAAACCTTGTTGGGATTTCTTCAAAGGTAGAACAAGTGAACAAGCTGATAGGTATGCGGTTGAACGATGTTCGCTTTATAGGCATATGGGGTATGGGTGGCATAGGTAAGTCAACTATTGCTAGAGCTGTCTATGAAGCAATCCAAGTTGAATTTCAACATGCTTGTTTTCTTGCAAATGTTCGAGAGTTATCTGAGAAAAATGGTTTAGTTCACATGCAAAGACAACTTCTTTCTCATCTGAATATAAGTGATTTTCATGATTTATATGATGGGAAAAACACAATACAGAATTCTTTATGCAGAAAAAAGATTCTCCTTGTTCTTGATGATGTGAATGAATTAAACCAGTTGGAGAATTTGGCCGGGAAACAAGATTGGTTCGGTCCAGGAAGTCGAGTACTGATCACAACTAGAGATAAACATTTACTAATGACACATGAAGTACACAAAACTTATGAAGTAGGAATGTTATTCCCTAATGAAGCCCTTAACCTCTTTAGTTTAAAAGCCTTTAAAGGAGATCAACCACAAGAAGGGTATTTGGATTTGTCCAAAGAAGTGGTTGACTATACTGGTGGTCTTCCATTGGCACTTGAGGTGTTAGGCTCCTATCTCTATGGAAGAAATGTTGATATTTGGCATAGTGCTATTCAAAAAATAAAAAGTGTTCCACACCCTAAAATCCAAGATAAACTGAAAATAAGTTATGAGAGTTTAGATTCCATGGAGAAGGATATTTTTCTAGATATTGCCTGTTTCTTCAAGGGAATGAAGGGAGATGAAGAATCTCCAAATGATCCTAGCAGACGTAGCAGGTTGTGGTCGCAAGAGGACATTGATCACGTCTTGACAAAAAACAAGGGAACTGAAGCAATTAATTGTATAAATATGAAATTACTTAGACCATACGAAGCACGATGGAACAATAAAGCATTCTCAAAGACAAGTCAGCTAAAATTTCTCAGTTTATGTGAGATGCAACTTCCCCTTGGCCTCAGTTGCCTTCCTTGTTCATTAAAAGTTCTTCACTGGAGAGGGTGTCCTTTGAAAACTCTGCCACTAACAACTCAACTGGATGAAGTTGTTGACATTAAATTATCTCATAGCAAAGTTGAACAACTTTGGCAAGGAATAAAGTTTATGGAAAAGCTGAAGTACTTGAATATGGCTTTTTCCAAGAACCTAAAGAGATTGCCTGATTTTTCTGGTGTTCCAAATCTTGAAAAATTGATTCTTAAAGGCTGTGAAAGCCTAACCGAGGTTCATCCATCCCTTGTACGCCACAAGAAAATTGTTCTGGTGAATTTACAAGACTGCAATAGTCTTAAATCTCTTCCAGGGAAGTTGGAGATGAGTTCCCTAAAGAAGTTAATTCTTTCTGGCTGCTGTGAATTTCGATTCCTTCCAGAGTTCGGAAGAAAAATGGAAAATCTCTCAATACTTGCTTTAGAAGGAACAGCTATAAGAAAACTGCCCTCGTCACTTGGATGCCTAGTTGGACTTACTCATTTAAACTTAAAAGACTGCAAAACTCTTGTTTGTTTTCCAGATACCATTCATGGATTGAATTCCCTCATAATTCTAGAAATTTCTGGATGCTCAAAACTCTATACATTGCCAGATGGTTTAAAGGAAATCAAGAGTTTGGAGGAACTCCATGCCAATGATACTGCTATTGATGAACTACCTTCCTCCATTTTTTTTCTAGATAGTCTTAAAATATTATCATTTGTCGGTTGCAGAGTGCTGTTGACAAAGTCAATGAACTCGTTTCTGCCATTCAATTGGATGTTTGAGAGTCAACTAGCTTCTACTGGATTCAGATTTCCAACTTCTGTCTTGAGTTTCCCTTCTTTGAAACATTTAAACCTAAGTTACTGTAATCTTTCTGAAGAATCTATCCCAGATTATTTTCGCCACCTATCATCATTGAATTCTTTGAATCTAACTGAGCTTCCATCAAGTATGACAGAGTTGGATGCAAGCAATTGTGGCTCACTGAAAACTACCAAATTTAATCCAGCAAAGCCATGTAGTCTCTTCACATCACCTCGACAACTGTCCTACTTTCAAAAACTTTGTCAGACAAGTGATGGATTTTATCTTCCGTGTGCAAGATTTGACATGCTTATCCCCGGGAAAGAAATTCCATCTTGTTATGCTATCCCACCTGAACTGTGCAACCATGAGATCGATTGTTATTTGTTTTCACGTAATGGTAAGAAGTTGATCAGCACCAGGAGATTACCTCCTATGGATCCATGTTCTCCTCACCTTTATATTCTATACCTGTCCATTGATCAATTTCGCGACGAAATTCTCAAAGAGGATTTCTGGAATGACATTGAATTTGCATTGAAATGTTATTGCTGTAATTCATTGCAAGTAGTGAGGTGTGGTTGCCGTTTGGTATGTAAGCAAGATGTTGAAGATTGGAACAACTTGAAGTAA 3006 0.3806 MCSSSTSRLCSYHVFLSFRGEDTRKGFTDHLCAALERKGITTFRDDKDLERGQAISQKLINAIQDSMFAVTILSPDYASSTWCLDELQMIMECSSNNNLQVLPVFYGMDPSDVRHQRGCFEEAFKKHQAKFGEHSDRVERWRDALTQVASYSGWDSKGQHEASLVENIAQHIHRKLVPKFPSCTENLVGISSKVEQVNKLIGMRLNDVRFIGIWGMGGIGKSTIARAVYEAIQVEFQHACFLANVRELSEKNGLVHMQRQLLSHLNISDFHDLYDGKNTIQNSLCRKKILLVLDDVNELNQLENLAGKQDWFGPGSRVLITTRDKHLLMTHEVHKTYEVGMLFPNEALNLFSLKAFKGDQPQEGYLDLSKEVVDYTGGLPLALEVLGSYLYGRNVDIWHSAIQKIKSVPHPKIQDKLKISYESLDSMEKDIFLDIACFFKGMKGDEESPNDPSRRSRLWSQEDIDHVLTKNKGTEAINCINMKLLRPYEARWNNKAFSKTSQLKFLSLCEMQLPLGLSCLPCSLKVLHWRGCPLKTLPLTTQLDEVVDIKLSHSKVEQLWQGIKFMEKLKYLNMAFSKNLKRLPDFSGVPNLEKLILKGCESLTEVHPSLVRHKKIVLVNLQDCNSLKSLPGKLEMSSLKKLILSGCCEFRFLPEFGRKMENLSILALEGTAIRKLPSSLGCLVGLTHLNLKDCKTLVCFPDTIHGLNSLIILEISGCSKLYTLPDGLKEIKSLEELHANDTAIDELPSSIFFLDSLKILSFVGCRVLLTKSMNSFLPFNWMFESQLASTGFRFPTSVLSFPSLKHLNLSYCNLSEESIPDYFRHLSSLNSLNLTELPSSMTELDASNCGSLKTTKFNPAKPCSLFTSPRQLSYFQKLCQTSDGFYLPCARFDMLIPGKEIPSCYAIPPELCNHEIDCYLFSRNGKKLISTRRLPPMDPCSPHLYILYLSIDQFRDEILKEDFWNDIEFALKCYCCNSLQVVRCGCRLVCKQDVEDWNNLK 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02450 1001 Pfam TIR domain 12 189 IPR000157 GO:0007165
Trre14g02450 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 435 IPR027417 -
Trre14g02450 1001 Gene3D - 342 425 IPR042197 -
Trre14g02450 1001 PRINTS Disease resistance protein signature 210 225 - -
Trre14g02450 1001 PRINTS Disease resistance protein signature 376 390 - -
Trre14g02450 1001 PRINTS Disease resistance protein signature 705 721 - -
Trre14g02450 1001 PRINTS Disease resistance protein signature 283 297 - -
Trre14g02450 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 650 IPR044974 GO:0006952
Trre14g02450 1001 SMART till_3 11 151 IPR000157 GO:0007165
Trre14g02450 1001 Pfam NB-ARC domain 197 426 IPR002182 GO:0043531
Trre14g02450 1001 SUPERFAMILY L domain-like 497 870 - -
Trre14g02450 1001 Gene3D - 176 337 IPR027417 -
Trre14g02450 1001 Gene3D - 10 175 IPR035897 -
Trre14g02450 1001 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Trre14g02450 1001 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Trre14g02450 1001 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 154 IPR035897 -
Trre14g02450 1001 Gene3D Ribonuclease Inhibitor 653 876 IPR032675 -
Trre14g02450 1001 Gene3D Ribonuclease Inhibitor 491 652 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02450 Trre-Chr14 23559524 23564097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02450 12 766 WRKY Transcription Factor Family AT4G12020 28.881 4.07e-88 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02450 - - gmx:100815486 1276.92