Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02401 ATGTCCTCTCCACACAGTTACTTCACCAATCTTGGCCTTGGCTACTCCATAGCCATAACCCTCGCTTTTCTCGTCCTCCTTGCCACTCTCATCCTCTCCTTTTACCTCTGTTGCCGCAACAACCATAATCCCAACAACAATCCAAACAACAATAACTCTCTCAACTACACTGACGGCGGCATTGTTTTGCGACTTGACACATTCATAGCTGAAAACGATGAAGAAAACCAACTTGGAGAAGAAAACACAGTAATGGGTCTAGAAGACAATGTTATAAATTCCTATCCAAGGTTTCAGTTTAGCAGAGACAGCGCAACTGTTTTGGGACAGAACACCACGTGTTCTATTTGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCTGAATGTCGTCATTACTTTCATCTCTGTTGTCTTGATTCCTGGTTGAAGCTTAATGGGTCTTGTCCTGTTTGTCGAAACTCCCCTCTTCCTACGCCGCTTTCTACTCCGCTTCAAGAGGTTGTTCCGCTTTCTCAGTATGGTGATGATCGGAGACGAAGGAGGTGA 558 0.4498 MSSPHSYFTNLGLGYSIAITLAFLVLLATLILSFYLCCRNNHNPNNNPNNNNSLNYTDGGIVLRLDTFIAENDEENQLGEENTVMGLEDNVINSYPRFQFSRDSATVLGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYGDDRRRRR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02401 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 160 IPR013083 -
Trre14g02401 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Trre14g02401 185 SUPERFAMILY RING/U-box 113 161 - -
Trre14g02401 185 PANTHER RING-H2 FINGER PROTEIN ATL67 5 184 IPR044289 GO:0016567|GO:0016740
Trre14g02401 185 SMART ring_2 114 155 IPR001841 -
Trre14g02401 185 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02401 Trre-Chr14 22906898 22907455 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02401 1 175 C3H Transcription Factor Family AT5G07040 36.571 1.14e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02401 - - lja:Lj1g3v2807930.1 261.151