Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02398 ATGTCCTCTCATACCACCTCCAATCTATCATCTTCACTAGAGATGAATGCCGTCCTAGAATTAGACGCATTCACAAGGTTGTTGCTCTTATTAATCTTTTTTGCCCTATTCGTCCGAGTTTGTTACGTTTATTTTTCCATGCAAAGTGATGATCATGTTCATCTCAATTCCAATGACAATGTGACAACAATACAACAACGCGATGATAAAAAACCCGCGACCGGTCTCCCTAGGAGCATCATCAACTCTTACCAAACATTCACCTTCGACAAAAACCAAATTGCCACAATTAATAATGATTATGATACAACTTGTTCCATATGCATTTCGGATTATAATGAATCCGAAATTTTGAAGATGATGCCGCAATGTCGCCACTTTTTTCATCAAAGTTGTGTTGATACATGGTTGAAGGTCAATGCTTCGTGCCCAATTTGTAGGAATTCTCTATTACAAGATAGTAATGATGTATCAAACTTAGAATCCGTCTAA 492 0.374 MSSHTTSNLSSSLEMNAVLELDAFTRLLLLLIFFALFVRVCYVYFSMQSDDHVHLNSNDNVTTIQQRDDKKPATGLPRSIINSYQTFTFDKNQIATINNDYDTTCSICISDYNESEILKMMPQCRHFFHQSCVDTWLKVNASCPICRNSLLQDSNDVSNLESV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02398 163 SUPERFAMILY RING/U-box 98 153 - -
Trre14g02398 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 152 IPR013083 -
Trre14g02398 163 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Trre14g02398 163 SMART ring_2 105 146 IPR001841 -
Trre14g02398 163 Pfam Ring finger domain 104 147 IPR001841 -
Trre14g02398 163 PANTHER RING-H2 FINGER PROTEIN ATL67 62 152 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02398 Trre-Chr14 22888013 22888504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02398 74 149 C3H Transcription Factor Family AT2G46495 46.053 1.46e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02398 - - ccaj:109814695 160.614