LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g02345	ATGATTAACACAAGACGTTTTCGTTTTAATGGTTTAGGTGCAACAAACTCTGGAGCTCAATCACCATGTCTCACAATACCACCTGGAATTAGTCCAACTTCATTGCTTGATTCCCCAGTCATGCTTTCTAATTCTCAGGCCATGCCATCTCCCACCACCGGGAGTTTCGCCATGCTTCCGCCTCGAATTGATGAAGGATCAATGCTCCCTTCTATCACACATGAACAAAGAAAAGAGGATGCCTCTTTCAAATTCAAGCCTCAAGTCAATTTGGGTCCTAATTCTTTGTCTCCCTATCATGCTTCTCTAAACCAGGTTTCTAATAAATGGCACATGATGAATGAAGCACATGAAGACATCAAAATGCTTGTTCAAGGTCAAAACATGTTAGGTTTTTCAGTCTCAAAAGATTTTGCAAACAACTATTTAGCTAGAAATAGTGGAGTGCATTTCGACAATGATGTGAAAATGGTAAATGATATGTTCTTTGATACCAGTAATGTTGACGTGCCAATATCTCGTTCTAAAGAGGGTAGTGATGAAAGCACTCTGCGAGAAAATTTGAACCATGATGAGGATATTCGACGACAACTTCTTTTAGAAGAAGAACAGAAAGAAATGTCTCATGCAACAGAAGGAAAAACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGCAGTGAATATCCAAGAAGCTACTATAAATGTACTCAGCCTAATTGTCAAGTCAAGAAAAAGGTGGAAAGATCGCACAACGGCCAAGTAATAGAAATTATTTACAGGGGAAATCATAACCATGCAATACCACATTCTAGTCGTCGAGGATCAGCACCTTCAAATGATGAAATGTCAGATATTGTTGAAGCCAATGAAACATGGGTTAGAGATGATGTTGAATCTGTATGGAGAAAAGATGCAAAACACGATCCGGAGTGGAAGCTTGATGGTCAAGAAAGAGATCCTAGAAAGAGATTTAGATCTCTAGGTATGTATGAATTAGACAATGCTGAAGAGCGTTATTCCACACTTGCTAATCACAATGGTGATAAAGGTAGAGCCACTCAAGCAGTTTTACGACTTGAAGACGATGTTGAAGATGCTGAATCAAAATTAAAAAGAAGAAAGAAGGAAAGCTATCCGTGTGAAACAATGGTGCCTTCGAGGATTGTTCGTGAGCCACGAGTGGTAGTCCAAATTGAGAGTGAAGTCGACATACTCGATGATGGTTATCGTTGGAGAAAGTATGGACAAAAGGTTGTCAAAGGGAATCCAAACCCCAGGAGCTACTACAAATGCACAAGTGCTAGATGTACCGTAAGAAAACACGTTGAAAGGGCTTCACATAATCTCAAATATGTTCTTACTTCTTATGAGGGAAAACACAACCATGAGGTTCCCACTGCAAGAAATAACAATCATATAAGCTCAAATGACATTGCTTTACCTTATAGTGGTGTTAATATGCAAGTCTCTAGTATCCCCAAGTTTGATAGAAAACAAAATTTTAGCAATGAGTTTATGAGATCAAATTTGATGGGAAGTTTCAGTAATGATATCAAGTTTGGACCATCTTACATGTCCCAAATGAAATATTCTTCCTTGAATAATATCAAACCTTATGGCGCTTACGGAACAAGTCTTGACATCGGTGTTGCGCCTCAAGCCGAACCTATTGACTCAATTTTCCCTGAGTTTCCAATGCTGCTACCATTGAATCTTTATATGCTGAAGGATGAACCTTTATATGCTACATGTCCACACTCTCTTGATCATACACGATCAACATTGATTTATCAAAGTTTCATGCAAAATTTCCCTTCATAA	1842	0.3849	MINTRRFRFNGLGATNSGAQSPCLTIPPGISPTSLLDSPVMLSNSQAMPSPTTGSFAMLPPRIDEGSMLPSITHEQRKEDASFKFKPQVNLGPNSLSPYHASLNQVSNKWHMMNEAHEDIKMLVQGQNMLGFSVSKDFANNYLARNSGVHFDNDVKMVNDMFFDTSNVDVPISRSKEGSDESTLRENLNHDEDIRRQLLLEEEQKEMSHATEGKTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHNGQVIEIIYRGNHNHAIPHSSRRGSAPSNDEMSDIVEANETWVRDDVESVWRKDAKHDPEWKLDGQERDPRKRFRSLGMYELDNAEERYSTLANHNGDKGRATQAVLRLEDDVEDAESKLKRRKKESYPCETMVPSRIVREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSARCTVRKHVERASHNLKYVLTSYEGKHNHEVPTARNNNHISSNDIALPYSGVNMQVSSIPKFDRKQNFSNEFMRSNLMGSFSNDIKFGPSYMSQMKYSSLNNIKPYGAYGTSLDIGVAPQAEPIDSIFPEFPMLLPLNLYMLKDEPLYATCPHSLDHTRSTLIYQSFMQNFPS	613

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g02345	613	Coils	Coil	356	383	-	-
	Trre14g02345	613	ProSiteProfiles	WRKY domain profile.	407	472	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	Pfam	WRKY DNA -binding domain	413	470	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	Pfam	WRKY DNA -binding domain	217	272	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	SUPERFAMILY	WRKY DNA-binding domain	212	275	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	SUPERFAMILY	WRKY DNA-binding domain	405	472	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	Gene3D	WRKY domain	202	276	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	ProSiteProfiles	WRKY domain profile.	211	275	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	FunFam	WRKY transcription factor 57	398	472	-	-
	Trre14g02345	613	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	36	499	IPR044810	GO:0003700
	Trre14g02345	613	SMART	WRKY_cls	216	274	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	SMART	WRKY_cls	412	471	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trre14g02345	613	FunFam	WRKY transcription factor	203	276	-	-
	Trre14g02345	613	Gene3D	WRKY domain	399	465	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g02345	Trre-Chr14	22421286	22426088	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g02345	24	479	WRKY Transcription Factor Family	AT4G26640	37.259	1.99e-81	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trre14g02345		WRKY	1.4e-22	CL0274