Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02259 ATGGTTTTGAGTAAAGGAATTTTCAATACTCATGTTATTGTTAGTTTCTTTCTGCTGATTATTAGTTGTAGCATGACCTATGGCACTGATAGTGACATCGCCTGCTTAAAAAGCGTACACGAATCGCTAAAAGACCCAAACAATTATCTCGAAAATTGGAATTTCGACAACAATACTGAAGGGTTTATTTGCAAGTTCAGTGGTGTTGAATGTTGGCACCCTGATGAGAATAGGGTTTTGAATCTCAAACTTTCTAATATGGGACTCAAGGGCGAGTTTCCTCGAGGCATTCGAAATTGCACAAGCTTAACAGGATTAGATTTTTCATTAAACAGCCTCTCTAAATCCATTCCAAATGATATATCTATTCTTGTCAACTTTGTAGTCACTCTTGATCTATCATCAAATGATTTCACTGGAGTGATACCTTTGTCGCTTTCTAACTGTACCTATCTTAATAGTCTTAAACTTGACTATAACCAACTTACCGGCCAAATCCCTCCGCAATTTGCTGTGCTCCCACGCCTTAAGTCATTTAGTGTTTCCAATAATCTTTTGACAGGAGAAGTCCCACGTTTTGGGAAAAATGTAGCAATTACGGAAGATAGTTATGCGAATAATTCAGCACTGTGTGGCGGTCCCTTGAAGTCTTGCACGACATCTTCGAAGACTAACACTGCGGTTATAGCTGGTGCAGCTGTTGGTGGTGTGACTCTTGCAGCGTTAGGAGTATCCGTTGGATTGTTCTTCTATGTGCGCCATGTTTCATACAGGAAAAAGGAAGACGACCCTGAAGGAAACAAGTGGGCAAGAATCCTAAAGGGAACCAAGAAAATAAAGGTTTCAATGTTTGAGAAGTCAATTTCAAAAATGAACTTGAGTGATCTCATGAAGGCTACTAATAACTTCAGCAAAAGCAATGTTATTGGGACTGGAAGATCAGGAACTGTTTACAAAGCTGTCCTTGACGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCGGAGCAAGAATTTGCGGCTGAGATGGCTACACTAGGAACAGTAAGACACCGGAACTTGGTTCCTCTTTTAGGTTTTTGCCTCGCCAAAAAGGAGAGACTTTTGGTCTATAAAAATATGCCGAATGGTACTCTTCATGATCAATTACATCCTGATGCTGGCGAGTGTACTATGGAGTGGTCTCTAAGGCTCAAAATCGCAATCGGAGCTGCCAAAGGATTTGCATGGCTTCATCACAACTGCAATCCCCGTATTATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTGGACACAGATTTTGAGCCTAAAATTTCTGATTTTGGCCTTGCTAGATTGATGAACCCGATCGATACACATTTGAGTACTTTTGTAAATGGTGAGTTTGGTGATTTAGGTTATGTTGCTCCCGAGTATACAACAACTTTGGTGGCTACTCCTAAGGGAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTGACAGGTGAAAGACCTACTCATGTGGCGAAAGCTCCAGAAACATTTAAAGGAAATTTGGTAGAATGGATTATGCAGCTCTCAGTCAACTCTAGCCTAAAAGAGGCACTCGATGAATCGTTAGTTGGGAAAGGTGTTGATCACGAGCTTTTTCAGTTTCTAAAGGTTGCGTGCAACTGTGTGACATCGACACCAAAGGAGAGGCCTACTATGTTTGAAGTATATCAGTTTCTAAGAGAAATTGGGAGTAGATATAATTTCATAACCGAGGATGAGATAATGGTACTTACAGATAATGGCGATGCTGGTAAGTTGGAAGAACTTATTGTAGCACGATAG 1836 0.4074 MVLSKGIFNTHVIVSFFLLIISCSMTYGTDSDIACLKSVHESLKDPNNYLENWNFDNNTEGFICKFSGVECWHPDENRVLNLKLSNMGLKGEFPRGIRNCTSLTGLDFSLNSLSKSIPNDISILVNFVVTLDLSSNDFTGVIPLSLSNCTYLNSLKLDYNQLTGQIPPQFAVLPRLKSFSVSNNLLTGEVPRFGKNVAITEDSYANNSALCGGPLKSCTTSSKTNTAVIAGAAVGGVTLAALGVSVGLFFYVRHVSYRKKEDDPEGNKWARILKGTKKIKVSMFEKSISKMNLSDLMKATNNFSKSNVIGTGRSGTVYKAVLDDGTSLMVKRLQESQHSEQEFAAEMATLGTVRHRNLVPLLGFCLAKKERLLVYKNMPNGTLHDQLHPDAGECTMEWSLRLKIAIGAAKGFAWLHHNCNPRIIHRNISSKCILLDTDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTTTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSVNSSLKEALDESLVGKGVDHELFQFLKVACNCVTSTPKERPTMFEVYQFLREIGSRYNFITEDEIMVLTDNGDAGKLEELIVAR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02259 611 Pfam Protein tyrosine and serine/threonine kinase 306 577 IPR001245 GO:0004672|GO:0006468
Trre14g02259 611 Gene3D Ribonuclease Inhibitor 93 227 IPR032675 -
Trre14g02259 611 Gene3D Ribonuclease Inhibitor 29 92 IPR032675 -
Trre14g02259 611 CDD STKc_IRAK 309 580 - -
Trre14g02259 611 SUPERFAMILY L domain-like 30 193 - -
Trre14g02259 611 ProSiteProfiles Protein kinase domain profile. 303 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g02259 611 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre14g02259 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 378 590 - -
Trre14g02259 611 Gene3D Transferase(Phosphotransferase) domain 1 378 597 - -
Trre14g02259 611 FunFam Nuclear pore complex protein NUP107 29 192 - -
Trre14g02259 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 264 377 - -
Trre14g02259 611 SUPERFAMILY Protein kinase-like (PK-like) 280 577 IPR011009 -
Trre14g02259 611 Pfam Leucine rich repeat 130 186 IPR001611 GO:0005515
Trre14g02259 611 Gene3D Phosphorylase Kinase; domain 1 264 376 - -
Trre14g02259 611 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Trre14g02259 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 57 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02259 Trre-Chr14 21300596 21302522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02259 14 591 Receptor kinase-like Gene Family AT3G28450 45.734 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre14g02259 PK_Tyr_Ser-Thr 6.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02259 - - gmx:100817267 956.436