LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g02251	ATGCAAACCTTGTTCTTATCCTTTTTGTTTATCTCGTTCTCCTCCTCACAAGCATCTCAACATTTTCTCTTTCACAACAACAATAGAAGATTCCTTCATGAACCCTTTGTTCCATTAAACTCTCTCCCTCCCTCTCAACCACCACCACTTTATTCTCCACCTTCAACCTCAAACACCAAACATCCATTTTCCACCACCATTCCTACTAACGACAACAACCCAAATCAAGACCAAAACCCAAACCAAGGCCAAAATCAAGACCAAAACCAAAACCAAAATCAATCACCATTTTTCCCAAACTACCCTCTATCACCACCACCACCATCCCCACTCACTTTTGCTACATTTCCAGCAAACATCTCAGCCCTAATACTTCCTCACACCCCCCAACCAGCTTCCTCTTCTAACAAACTCCTCCCTATAGCACTCTCCGCTACTGCCATTGCTGCTGTCGTTGTTACTATCTCCGGTTTTCTTTACTTCCGTCGACGTTTCCATAACCGTCGTACTTCTACCGACACCAAAACTCTAAGATCTGACAGCAGCCTTGAGCTTTTCCCGCGCAATGTAGAAACCGCCGGCGATGTTACAGGAAACGCCTCCGATTTTCTCTACCTTGGAACTGTCGTGAACTCTCGCCGAGATGACGGTCCTCGCGGTGGAAGTTCGGTGTCTCGGAAACTTGAATCGCCGGAGCTTCGGCCTCTTCCGCCGTTAATTCGCCTTCCCGCACCTCCACCGCCGCCGCCGCGTGACGAGAGCGACTCTGATGAAGAAGATGAAGAATTTTACTCGCCGAGAGGATCCTCTCTTGGTGGCCGAGAAAGCTCCGGTGGTACTTGTTCATCTTCACGGCGTACATTCTCCGCCATTCCCGCTAGAAGAAGCGGCGAATCAAGCTCAATTTCATGCTCTTCTGCTTCTTTCGGTTCTCCGGAGCATTCTCTTTCGGTTAGTCTCTCACCGCCGGCGAGTTCCAGTCCCCGGAGAACACAACAAAAATCACCTGAAACTACACCGTCACACAACACCGTAACCATTACCTCATCACCAATTCACAACGAACAGGTGGAATACAGTTCTTCTTCATCGTTCTCTTCATCACGTTCAACACCAGAGAGAGATTTTGATGAAGAAAAAGAAAAGGAAAAGGAAAAAGAAAAGGCTTCTACATCAACAAATGCACATTCAAAATCATCATCATTGTCATTACAAGAGAGATTTATGGAGAAAAATGAGAATGCTTCTTTATTAGAACAACCACAAAGGCAATCTAATGCTTCATCTTCAATTTTCTCTCTTCCTTCTTCACCTGAGAGAATGATGCATCATCAAGCTTTTGATCAATCTCCGAGAATGTCAAGTGTTTCGGACGGGTTAAAGCTACACGGTCTGTCGTCATTGCCTCTGTCACCCGCTCTACTTTCATCGCCGGAAACAGAAAGAGGAGGGTTTAACTGCAATTCAAACAGATGGGGAACATTTTCTTATGCCATGCCTGCGCCACAGAGGAAACACTGGGAGATTCCGCTTCCTGCGAAGCCAGTTGCTTCACCACCGCCACCACCACCTCCTCCTCTGCCGCGGCCGCGGCAGAGGAGGCATTGGGAAATGTCAGCAACCTCAGCGATTGTTGATCAGCCTCGATCTAGTTTGATGCCACCGGAGTTACTACCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAGACAAGTAATGAGTGTTTAAGGGAAATTGAAGAGAGTTCGAAACCTAAATTGAAGCCATTGCATTGGGACAAAGTGAGAACAAACTCTGATCGTGAAACGGTGTGGGATCAGATGAATTCGATGTCGTTTAAATTGAATGAGGAAATGATTGAGACATTGTTTGTAGTGAACACATCAAACCAAAAACCCAAGGATGCTGCTCCATGGTCTGTTCTTCCCCTGCCAAATCAGGATGGAAGAGTACTAGATCCGAAAAAGTCTCAAAATATTGCAATCTTGCTCAAGGCTCTTAATGTCACAATAGAAGAAGTGTGTGAAGCACTTTTAGAAGGTAGTAGTGATACACTCGGCGCAGACCTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGATGACTCGCCAACTAAGCTTGATCTCGCTGAGAAATTTTTGAAGGCAGTGCTTGATATACCTTTCGCATTTAAAAGGGTTGAAGCAATGCTTTACATGGTCAATTTTCAATCTGAAGTAGAGTATCTTAGAAAATCATTTCAAACTCTAGAGGCTGCCTGCGGAGAACTGCGGAATTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACCGGGAACCGCATGAATGTGGGAACAAATCGCGGTGATGCAGAGGCCTTCAAACTCGATACACTTCTAAAATTGGCTGATGTAAAAGGCGCGGATGGGAAAACCACCCTACTTCATTTTGTCGTACAGGAAATTATTAGAACCGAAGGCGCTCGTCTCTCTGGTACTAATCAAATTACAAGCTCTACTTTAACTGAAGATGTTAAGTGTAGGAGACTAGGCCTACAAGTTGTGTCTAATCTGAGTTCAGAACTATCAAATGTAAAGAGGGCTGCTACTATGGATTCCGAAGCCCTCAGCAGCGATGTCTTTAAAATTTCCAAAGGAACTGCAGATATAGCTGAAATTGTGCAATTAATCGAAAAGCTGGGATCTGATGAAAGCAGTCAGAAATTCAGAGAATCGATGAACAAATTCATTAGAATGGCTGATGAGGAAATTCTGAAAATTCAAGCTCAAGAAAGTGTTACTTTGACCCTTGTGAAGGAGATTACCGAATATTTTCATGGAAACTTAGCAAAGGAAGAAGCTCATCCATTCAGAATCTTCTTAGTTGTAAGAGATTTTTTAGCCGTTCTTGACAGGGTCTGCAAAGAAGTTGGTATGGTAAACGAGCGGACTGCGTTTAGTTCCGCTCATAAACTTCCTGTTCCGGTTAATCCAATGCTTCCGCAACCTCTTCCTGGATTATATGGGAGGAAAGATTGTAGTAACTCTTCAGATGATGAAAGTCCATCACCTTAG	3090	0.4427	MQTLFLSFLFISFSSSQASQHFLFHNNNRRFLHEPFVPLNSLPPSQPPPLYSPPSTSNTKHPFSTTIPTNDNNPNQDQNPNQGQNQDQNQNQNQSPFFPNYPLSPPPPSPLTFATFPANISALILPHTPQPASSSNKLLPIALSATAIAAVVVTISGFLYFRRRFHNRRTSTDTKTLRSDSSLELFPRNVETAGDVTGNASDFLYLGTVVNSRRDDGPRGGSSVSRKLESPELRPLPPLIRLPAPPPPPPRDESDSDEEDEEFYSPRGSSLGGRESSGGTCSSSRRTFSAIPARRSGESSSISCSSASFGSPEHSLSVSLSPPASSSPRRTQQKSPETTPSHNTVTITSSPIHNEQVEYSSSSSFSSSRSTPERDFDEEKEKEKEKEKASTSTNAHSKSSSLSLQERFMEKNENASLLEQPQRQSNASSSIFSLPSSPERMMHHQAFDQSPRMSSVSDGLKLHGLSSLPLSPALLSSPETERGGFNCNSNRWGTFSYAMPAPQRKHWEIPLPAKPVASPPPPPPPPLPRPRQRRHWEMSATSAIVDQPRSSLMPPELLPPSRPFVLQNQTSNECLREIEESSKPKLKPLHWDKVRTNSDRETVWDQMNSMSFKLNEEMIETLFVVNTSNQKPKDAAPWSVLPLPNQDGRVLDPKKSQNIAILLKALNVTIEEVCEALLEGSSDTLGADLLESLLKMAPSKEEERKLKEHKDDSPTKLDLAEKFLKAVLDIPFAFKRVEAMLYMVNFQSEVEYLRKSFQTLEAACGELRNCRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSGTNQITSSTLTEDVKCRRLGLQVVSNLSSELSNVKRAATMDSEALSSDVFKISKGTADIAEIVQLIEKLGSDESSQKFRESMNKFIRMADEEILKIQAQESVTLTLVKEITEYFHGNLAKEEAHPFRIFLVVRDFLAVLDRVCKEVGMVNERTAFSSAHKLPVPVNPMLPQPLPGLYGRKDCSNSSDDESPSP	1029

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	40	112	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	371	392	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	511	534	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	270	370	-	-
	Trre14g02251	1029	Gene3D	Formin, FH2 domain	574	985	IPR042201	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	1010	1029	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	40	55	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	56	98	-	-
	Trre14g02251	1029	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	519	987	-	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	211	455	-	-
	Trre14g02251	1029	Pfam	Formin Homology 2 Domain	581	975	IPR015425	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	236	250	-	-
	Trre14g02251	1029	PANTHER	FORMIN-RELATED	364	1011	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Trre14g02251	1029	SMART	it6_source	576	990	IPR015425	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	393	436	-	-
	Trre14g02251	1029	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	576	1001	IPR015425	-
	Trre14g02251	1029	MobiDBLite	consensus disorder prediction	513	529	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g02251	Trre-Chr14	21235088	21238841	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g02251	580	993	FH2 protein (formin) Gene Family	AT2G43800	61.412	1.53e-171	523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g02251	-		-	gmx:100801837	975.311