Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02239 ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGTCTCCAACGACCCGACCTTGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTTGTTGGTCGTAGACCCCGGGGAAGACCTCCAGGCTCGAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAGGTTAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTCAGTGGTAGTGGAACTGTTACTAACGTGACCCTGCGACAGCCAGCTGCCGCAGGATCTGTAGTGACACTGCACGGAAGATTTGAGATATTATCTTTGTCTGGATCGTTTCTACCACCTCCAGCTCCACCGGGTGCTACAAGTTTGAGTGTGTTTCTAGGTGGAGGTCAAGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGATTGCTTCTGGGCCGGTTATTGTTATTGCTTCATCTTTCACTAACGTAGCCTATGAGAGGCTACCGTTGGATGAAGATGAATCCCTTCAGATGCAACAAGGGCAATCATCTGCAGGCGGTGGTGGTGGTGATGGTGTTAATAACTCTTTTCCTGACCCGTCTTCGGGGCTTCCATTCTTCAATTTACCTATTAATATGCCTCAATTGCCTGTGGATGGTTGGGCTGGAAACTCTGGTGGAAGACAATCTTATTGA 801 0.4769 MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEDESLQMQQGQSSAGGGGGDGVNNSFPDPSSGLPFFNLPINMPQLPVDGWAGNSGGRQSY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02239 266 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Trre14g02239 266 FunFam AT-hook motif nuclear-localized protein 83 210 - -
Trre14g02239 266 MobiDBLite consensus disorder prediction 209 243 - -
Trre14g02239 266 MobiDBLite consensus disorder prediction 24 73 - -
Trre14g02239 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 211 - -
Trre14g02239 266 PIRSF ESCAROLA 4 253 IPR014476 GO:0003680
Trre14g02239 266 CDD DUF296 84 166 IPR005175 -
Trre14g02239 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 219 IPR014476 GO:0003680
Trre14g02239 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Trre14g02239 266 Gene3D - 83 218 - -
Trre14g02239 266 MobiDBLite consensus disorder prediction 210 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02239 Trre-Chr14 21043262 21044062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02239 1 263 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.238 1.24e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02239 - - gmx:100814613 417.927