Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02220 ATGCCTCCGAAAGTGGTAAAAAGAGGTGCTGCGGCCAAGAAAGCGAAAGATTCTTCAAAAACTGCAATTCAGAATCCGCAGCAAGAATCTGAACCTGAACCTGTCAAGAATCATGATGATAATCATGTTGCTGATGTTGTAGGGGAGGATAATCCCATTGAAACAAACAATTTGGCTCAAGAGATTGTGCCTAATGGTTTGAATGTGGTGGAATACAATGGAGAGGAGATTAAGGAGTCCTTAGATGAATATGAAAAAGATGAGCACTTAGATTTGGAGGATAATTATCATGAGTATGATCCTGAGGAGTATGTTGGTGATGACTATGATGAGCGGGAAATTGAACAAGATGAGGGTCAGGAGATCGGAGATGAAGTGGAGGAAGAACCTGAAGAAAATGTGGATGAAGAAGAAGGTAATACAGGCGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAAGGTGATGATGATGCCGCTGCTGGTGATGATGATGATGCTACTGCAGGTGATGATGGTGATGATGCTACTTCTGGTGATGATGATGAGCATGCCGCTGAGGAGAACGGGCATGAGCATCTGGTTGATGTGGAGGAAGAGGAACAAGGTGAAGTTAGAAAGGCGAGGCAGAAGAAAAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAAGATGCGACGGACCATGATCTGAGGAAGGTTTTCGGTAAAGTTGGGGAGATTACTGAAGCCAGGCTGATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTATTGCGTTTTGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTATCACTACATGTCCGTACAGTGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGATGCTTTAAAGGAGAAATTGAAACATTATGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTAGAAGATGGTAACAATGAGGGTATGAACTGTGGATTTGCATTTTTGGAATTTTCATCTCGTTCAGATGCTAAAGAAGCCTATAAGCGATTGCAGAAGACAGATGTTGCTTTTGGAGATGATAAGCCTTCAGAGATTTCCTTTGCAGACTCCTTTATTGACCTGGGTGATGATATTATGGCACAGGTTAAAACTGTATTTATTGATTTACTGCCTCCTTCATGGGATGAAGGTTATGTCCAAGATCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACATGCCAGCGGCTCGCAGGAGGAATTATGGATTTGTTACGTTTGCTACGCATGCTGCTGCTGTGGAATGTTCTGAGAGCATCACCAGTGCAGGGTTAGGGGAAGGCAGCAAAAAGGCAAAAGTTAGGGCTAGATTGTCGAGACCTCTTCCGAAAATTCGTGGAAAACATGTTACTCGCAAGGACTTTTCTGGCCGAAAGTCTGGAAGATTGGCAAGGCCTTCACGTAGTGGACCTTTACCACGGAGTCGACCTTTACCACGGAGTCGACCTATACCACAGAGTCGACCTGCTCGTGTGGTGAGAAGATTTGGAAATCGTATTCCACCAGTTAGACCTTCTAGTGCGAGAAATAGATGTCCTGTCACATCGATGTCAGTAAGAGCTAGGCCAGTCACTCCTCCAGCTAGATCGTATGACAGGAGATCGACCGCTGCATATCCAAAGAGTAGCATGAAGAGAGCTTATGACCAACCTGTGGATCTTCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGTTACCAGATGGCCTCTCAAAGACGTCCATCTTCTTACAGAGATTATCCAGCCCGTGACTCTGGCTACTCTGACCCGCATAGTAATGCATCTCGTACTGCACCAAGGAGGGGTTATCTGGATGATGGTTATGATCGAAGACTTGAGAGGCCTCCTCCTCCATCTCCCCATTTAAGTTACCATGAAGGACGTCCCCGTGATTACGACACGCTATCTGGCTCGAAACGTCGTTATGCTTCCATTGATGATATTTCTCCACGGTATGCTGATGCTGCTGCTCGCCAATCAAGATCTCGTTTAGACTATGAATATGGAGGTAGTGGTTCACAATATAGAGAGGCTTATGATGATAGGCTTGGAAGATCTAGTTTGGGATATCATAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACAAGGGACATATAGCAGTCGACATGACACGAGTTATGGCGGAGGTTCTATTGGTGGTAGTGATGGGGGCATCTACTCATCAAGTTATGGTCGCGATTACATATCTCGTGAAAGTGATGTTGGCCGGAGCTCGTATTCGTCCATGTATTCTAGCAGGGGTATGAACGGTAGTAGCAGTTATATGGGTGGTGGTGGTGGTGGATCTAGATCTTATTATTGA 2430 0.4362 MPPKVVKRGAAAKKAKDSSKTAIQNPQQESEPEPVKNHDDNHVADVVGEDNPIETNNLAQEIVPNGLNVVEYNGEEIKESLDEYEKDEHLDLEDNYHEYDPEEYVGDDYDEREIEQDEGQEIGDEVEEEPEENVDEEEGNTGDEEVEYVYEEVEGDDDAAAGDDDDATAGDDGDDATSGDDDEHAAEENGHEHLVDVEEEEQGEVRKARQKKKEFEVFVGGLDKDATDHDLRKVFGKVGEITEARLMMNPQTKKNKGFALLRFETVEQVKRALAELKNPVINGKQCGITTCPYSDTLYLDNICKTWKKDALKEKLKHYGVESFKDLTLVEDGNNEGMNCGFAFLEFSSRSDAKEAYKRLQKTDVAFGDDKPSEISFADSFIDLGDDIMAQVKTVFIDLLPPSWDEGYVQDLLKKYGEVEKVELAKNMPAARRRNYGFVTFATHAAAVECSESITSAGLGEGSKKAKVRARLSRPLPKIRGKHVTRKDFSGRKSGRLARPSRSGPLPRSRPLPRSRPIPQSRPARVVRRFGNRIPPVRPSSARNRCPVTSMSVRARPVTPPARSYDRRSTAAYPKSSMKRAYDQPVDLPPPRSRVSADYGYQMASQRRPSSYRDYPARDSGYSDPHSNASRTAPRRGYLDDGYDRRLERPPPPSPHLSYHEGRPRDYDTLSGSKRRYASIDDISPRYADAAARQSRSRLDYEYGGSGSQYREAYDDRLGRSSLGYHSGSRSSISIQNSQGTYSSRHDTSYGGGSIGGSDGGIYSSSYGRDYISRESDVGRSSYSSMYSSRGMNGSSSYMGGGGGGSRSYY 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02220 809 Gene3D - 388 474 IPR012677 -
Trre14g02220 809 MobiDBLite consensus disorder prediction 1 54 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 32 47 - -
Trre14g02220 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 285 IPR000504 GO:0003723
Trre14g02220 809 Gene3D - 295 378 IPR012677 -
Trre14g02220 809 MobiDBLite consensus disorder prediction 78 96 - -
Trre14g02220 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 379 IPR000504 GO:0003723
Trre14g02220 809 CDD RRM_SF 297 364 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 724 758 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 457 677 - -
Trre14g02220 809 CDD RRM_SF 394 449 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 97 182 - -
Trre14g02220 809 SUPERFAMILY RNA-binding domain, RBD 216 319 IPR035979 GO:0003676
Trre14g02220 809 MobiDBLite consensus disorder prediction 78 208 - -
Trre14g02220 809 SUPERFAMILY RNA-binding domain, RBD 296 452 IPR035979 GO:0003676
Trre14g02220 809 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 392 474 IPR000504 GO:0003723
Trre14g02220 809 MobiDBLite consensus disorder prediction 636 650 - -
Trre14g02220 809 Gene3D - 165 290 IPR012677 -
Trre14g02220 809 MobiDBLite consensus disorder prediction 183 208 - -
Trre14g02220 809 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 799 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 772 809 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 776 801 - -
Trre14g02220 809 SMART rrm1_1 296 375 IPR000504 GO:0003723
Trre14g02220 809 SMART rrm1_1 216 289 IPR000504 GO:0003723
Trre14g02220 809 SMART rrm1_1 393 468 IPR000504 GO:0003723
Trre14g02220 809 CDD RRM_SF 217 286 - -
Trre14g02220 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 394 451 IPR000504 GO:0003723
Trre14g02220 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Trre14g02220 809 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 363 IPR000504 GO:0003723
Trre14g02220 809 FunFam Heterogeneous nuclear ribonucleoprotein Q 295 378 - -
Trre14g02220 809 MobiDBLite consensus disorder prediction 724 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02220 Trre-Chr14 20861157 20866252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02220 217 480 Eukaryotic Initiation Factors Gene Family AT1G22760 22.074 7.62e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02220 - - gmx:100808583 845.499