Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02200 ATGAGTCTTTCTGGTTCAATTCCTGATTCTATACAAAATTTGTTTAATTTGGATACACTTGCACTTGATATTAATCACTTTTCTGGATCCATTCCTTCCACAATTGGAAAGTTGAAAAAGCTATATTCTTTGTATTTGGGAACGAATCGTTTTTCTGGATCGATTCCGGACTCTATAGGAGATTTGATAAATTTAGAAGAATTTAGTGTCCAAGAAAACAATCTCTCAGGAACTATTCCAGCTTCAATTGGAAATTTGAAGTGGCTCAATGTGTTTGAAGTAGCTACCAATAAACTTCATGGTGGAATTCCAATTGGACTTTATAACATTACTAATTGGTATTCCTTTGTTGTGTCTGAGAATCAATTAGTTGGTCATTTGCCGCCGAAAATATGTTCTGGTGGACAATTAAGGTACTTGAATGCTGATCACAACCGTTTCTCGGGTCCGGTACCAACAAGTTTGAAACACTGTGATACCGTTGAAAGAATCAGACTTGAGGGAAATTTGATAGAAGGTGATATAGCACAAGATTTTGGTGTATATCCGAATTTGCGATACCTTGATCTGAGTGACAATAAGTTTCATGGCCAAATTTCATCAAACTGGGGGAAGTCTCTTGATCTTGATACTTTCAAGATATCCAACAATAATGTTTCGGGTGGTATACCGTTGGAGCTTACCGGTTTAACTAAGCTAGGTAGGCTTCATCTTTCTTCGAATCAATTGACCGGGAAACTTCCAAAGGAATTTGGAGACATGAAATCATTAGTCGAACTCAAGATGAGTAACAATCATTTTATAGATACCATTCCAACAGAATTTGGATTGCTGCAGATACTTAATGAGTTGGATCTCGGAGGAAACGAGTTGAGTGGCACGATACCGAAGGAAGTTGCAAAGCTACCAAGGTTACGGATATTGAATTTGAGCAGAAACAAATTCGTAGGAAGTATTCCCATTCAGTTTGGTTCGGATTTGGAGTCACTTGATCTTAGTGGCAATTTTTTGAATGGAAAAATACCAATAACTCTTGAAAACTTGGTGCAGTTGTCAATGTTGAATCTCTCACACAATAGGCTTTCAGGAACCATTCCTCAAAATTTTAAAAGGAATTTGGTTTTTGTTAATATATCAGACAACCAGTTAGAAGGGCCACTTCCAAATATTCCAGCTTTTCTTAATGCTTCATCTGAATCATTCAAAAATAACAAAGACTTATGTGGAAATATCACAGGTTTGGTTCCTTGTGCAACAAACCATAGTAGAAAGAGCAAAAATGTCCTTCGATCGGTATTCATTGCTTTAGGAGTTCTAATATTTGTGTTGTGCATGGTTGGAATTTCGATGTATATTTTGTGTCGAAGACAAAAACCAAGGGAAGAAAACCAAACTGCAGAGGAAGCACAAAAGGGAGTACTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACCGAGAATTTTGATGATAAATATCTCATTGGAGTTGGAAGTCAAGGAAATGTTTACAAGGCAGAATTGTCTGCAGGTGTGGTTGTTGCTGTGAAGAAGCTTCATTTAGTAACCGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTTAAGAGCGAGATTGAAACCTTGGCTGAAATCAAACACAGGAACATCATTAAACTTATTGGGTTTTGCTCACATTCTAAGTTCTCATTTTTGGTTTACAACTTCTTGGAAGGTGGAAGCTTAGATCATATACTAAACAATGACACACAAGCTGCTGAATTTGATTGGGAAAAGAGAGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCATGATTCCTTACCTCCTATTATTCATCGCGATATATCAAGCAAGAATGTTCTTCTTAATCTCGACTATGAAGCTCATGTCTCTGACTTCGGTATCGCTAAGTTTCTAAAGCCTGGTTTAGTTAGTTGGACCCAATTTGCAGGCACTTTTGGATATGCAGCACCAGAGTTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATATAGCTTTGGTGTCCTTGCTTTGGAAATCATAATAGGAAAACATCCAGGAGATCTCATTTCATTATTTTTGTCACCATCTACAAGGCCAATGGCTAATGATATGTTGTTGATGGATGTTTTAGATCAACGGCCGCAACAAGTTATGAAACCAATCGATGAGGAGGTTATCTTGATTACAAAGTTGGCATTTGCTTGTTTGAGTCAAAATCCACGCTCTCGTCCAACCATGGAACAAGTATCTAAGATGCTTGCAGCAGGAAAATCACCTTTGGAGGGGACTCAACTTCGGACGATCAGACTAGGACAACTTCAATAA 2370 0.3738 MSLSGSIPDSIQNLFNLDTLALDINHFSGSIPSTIGKLKKLYSLYLGTNRFSGSIPDSIGDLINLEEFSVQENNLSGTIPASIGNLKWLNVFEVATNKLHGGIPIGLYNITNWYSFVVSENQLVGHLPPKICSGGQLRYLNADHNRFSGPVPTSLKHCDTVERIRLEGNLIEGDIAQDFGVYPNLRYLDLSDNKFHGQISSNWGKSLDLDTFKISNNNVSGGIPLELTGLTKLGRLHLSSNQLTGKLPKEFGDMKSLVELKMSNNHFIDTIPTEFGLLQILNELDLGGNELSGTIPKEVAKLPRLRILNLSRNKFVGSIPIQFGSDLESLDLSGNFLNGKIPITLENLVQLSMLNLSHNRLSGTIPQNFKRNLVFVNISDNQLEGPLPNIPAFLNASSESFKNNKDLCGNITGLVPCATNHSRKSKNVLRSVFIALGVLIFVLCMVGISMYILCRRQKPREENQTAEEAQKGVLFSIWSHDGKMMFENIIEATENFDDKYLIGVGSQGNVYKAELSAGVVVAVKKLHLVTDEEMSTFSSKSFKSEIETLAEIKHRNIIKLIGFCSHSKFSFLVYNFLEGGSLDHILNNDTQAAEFDWEKRVNVVKGVANALSYLHHDSLPPIIHRDISSKNVLLNLDYEAHVSDFGIAKFLKPGLVSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIIGKHPGDLISLFLSPSTRPMANDMLLMDVLDQRPQQVMKPIDEEVILITKLAFACLSQNPRSRPTMEQVSKMLAAGKSPLEGTQLRTIRLGQLQ 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02200 789 Pfam Leucine rich repeat 209 267 IPR001611 GO:0005515
Trre14g02200 789 Gene3D Phosphorylase Kinase; domain 1 456 576 - -
Trre14g02200 789 PANTHER LEUCINE RICH REPEAT KINASE 2 2 772 - -
Trre14g02200 789 Gene3D Ribonuclease Inhibitor 1 110 IPR032675 -
Trre14g02200 789 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Trre14g02200 789 SUPERFAMILY RNI-like 2 106 - -
Trre14g02200 789 Gene3D Ribonuclease Inhibitor 111 419 IPR032675 -
Trre14g02200 789 Pfam Leucine Rich Repeat 327 348 IPR001611 GO:0005515
Trre14g02200 789 FunFam Leucine-rich repeat receptor protein kinase MSP1 459 576 - -
Trre14g02200 789 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 110 421 - -
Trre14g02200 789 Pfam Protein kinase domain 498 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g02200 789 FunFam MDIS1-interacting receptor like kinase 2 577 774 - -
Trre14g02200 789 SUPERFAMILY Protein kinase-like (PK-like) 480 768 IPR011009 -
Trre14g02200 789 SUPERFAMILY RNI-like 72 385 - -
Trre14g02200 789 SMART LRR_typ_2 230 253 IPR003591 -
Trre14g02200 789 SMART LRR_typ_2 254 277 IPR003591 -
Trre14g02200 789 SMART LRR_typ_2 38 62 IPR003591 -
Trre14g02200 789 SMART LRR_typ_2 302 326 IPR003591 -
Trre14g02200 789 SMART LRR_typ_2 348 371 IPR003591 -
Trre14g02200 789 ProSitePatterns Tyrosine protein kinases specific active-site signature. 622 634 IPR008266 GO:0004672|GO:0006468
Trre14g02200 789 FunFam MDIS1-interacting receptor like kinase 2 isoform A 5 107 - -
Trre14g02200 789 ProSiteProfiles Protein kinase domain profile. 496 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02200 Trre-Chr14 20690782 20693243 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02200 3 670 Receptor kinase-like Gene Family AT4G08850 45.000 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g02200 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02200 - - gmx:100815688 1001.5