Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02175 ATGGAAGAGGGAAAATATAAATCGAGGAAAGAAGACGGTGATTCTAAGCGGAGTCATCGTGATCGAGATCGTGAAAGAACTGGTGAAAGAGGTAAGGATAGAAGTGATGGTAGGCATAAGGATAATAGGGAGAAGAGGGATCACGAATCTCGATGGCACGACAGAGAGAAAAGCATGGATTCTGAGGATAAGCATGATAGAAACAGGGAGAAGCGCAGAGATGTTAAAGAGAAGGATAGGGCACGGGTTCATGATTTTGACCGAGAAAAGAGAGACAGGAAAAGGGAAAGAGATAGAGAGGAGAAAGAAAAGGAGAGAGTAAGAGAGAAAGAAAGAGAGAAGGCAGAGAAGGAAAAAGAGAGATTAAGGGAGAAAGAAAGAGATAGGGAAGATAAGGAAAAGGAGAGAATGAGGGAGAAAGAGAGAGAAAGGGAAAGAAAGGAGAAGGAGAGGATTAAAGAGAAAGAAAGGGCAAGGGAAAGGAGGAATCATGAGAGAGAGAAGGAAAGAGATAAAGGAAAGAGAGGACGGGAGCGGGAGTGGGAGAAGCATAGCGATGTTGATAGCGAAGATAGTGATGGTGAGTTGAGGGAGAGAAATAGAAAGCGGCATAAGAAAGAGGATGACAATTATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAGGAAAGTTGATGGGATTAACAGAAGCCCTAGGAGAAAGAGTGATGGAGATTACTCTGATTCCAAAGAGAAAGAGAAAAGACTTACCCGTGACGAGGAAATGGAAGTTGAACAAAAGAGGTTGGATGGTGAAATGGAAAAGCGAAGGAGGAGAGTTCAAGAGTGGCAAGAGCAAAAGAGGAAGGAGGAAGAGGCAGAAAGAGAAAAGCAAGGTGAAGCAAGTGTTACTGAACTAGAGTCTGGAAAGGCATGGACACTTGAAGGGGAGGATTCTGATGATGAAGATGGAACAGGTAGACATACAAGTATGGATGTAGACGAAGACAATAAACTTGCTCATAATGAACCTAGGGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTGCGTCCGATTTACATAATGGAGATGCTGGTGCTCCTACCGACGATGAGATTGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGATTGAAAAGTCGCACAATGCTGTTAACTCAACACCTTCTGATAAAGCTTCTGACTTGAAACCCAAGGATAAAGAGGACGAGCGTAGTAATGGTCGACAATCAAGGAAAGGTTCAAATAAATCTCTTGGCAGGATAATTCCTGGTGAAGAGTCCGACTCAGATTATGCAGATCCTGATGTTGAGGGGGATCCATTAGATGAAGATGACGACGAGTTCATGAAGAGAGTGAAGAAAACAAAAGTTGAAAAGCTTTCTATAGTTGACCACTCAAAGATCGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTCTTGAAGAAGTTATATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGAGACAATAAAGAAGGCAAACTTCGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCGGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAAGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTTACAAAAGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAAATAGTAGTTTGTACTCCAGGTAGGATGATCGACATATTGTGCACCAGTAGTGGAAAAATAACTAACCTGCGCAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTCAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATGCATTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGGTGGTGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTAAAATCCCTTGCCGATGGCTTTATGGCAAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGTAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGAAGATGGTATTAGGAAGGCTGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGACTCCAGTCTTGCCTGGGTCAGGGCTACCCGTTGCTACAAATGATGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACCTGCAGCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACCATAAGGGGACAGTATTTCCAATCTGGCAAAGTCACAGGACCTGGGGATCGCAAACTCCACTTGTTCATTGAGGGCCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAACCATGCTTTGCAACTACCCGGTGGAACTCAACCAGGCAAATACTCGGTTGTATAA 3369 0.4319 MEEGKYKSRKEDGDSKRSHRDRDRERTGERGKDRSDGRHKDNREKRDHESRWHDREKSMDSEDKHDRNREKRRDVKEKDRARVHDFDREKRDRKRERDREEKEKERVREKEREKAEKEKERLREKERDREDKEKERMREKERERERKEKERIKEKERARERRNHEREKERDKGKRGREREWEKHSDVDSEDSDGELRERNRKRHKKEDDNYKGREKEKSSSKSNRKVDGINRSPRRKSDGDYSDSKEKEKRLTRDEEMEVEQKRLDGEMEKRRRRVQEWQEQKRKEEEAEREKQGEASVTELESGKAWTLEGEDSDDEDGTGRHTSMDVDEDNKLAHNEPRESMVVDVDNGTVASDLHNGDAGAPTDDEIDPLDAFMNSMVLPEIEKSHNAVNSTPSDKASDLKPKDKEDERSNGRQSRKGSNKSLGRIIPGEESDSDYADPDVEGDPLDEDDDEFMKRVKKTKVEKLSIVDHSKIDYIPFKKNFYIEVKEISKMTLEEVILYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEGGARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEEDGIRKAGGDISQHPALAQTPVLPGSGLPVATNDGAARAALAAINLQLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITIRGQYFQSGKVTGPGDRKLHLFIEGPSEQSVKRAKVELKRVLEDITNHALQLPGGTQPGKYSVV 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02175 1122 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 676 684 IPR000629 -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 937 977 - -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 436 452 - -
Trre14g02175 1122 CDD DEADc_DDX46 510 731 - -
Trre14g02175 1122 SMART helicmild6 782 863 IPR001650 -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 1 299 - -
Trre14g02175 1122 Gene3D - 732 905 IPR027417 -
Trre14g02175 1122 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 521 549 IPR014014 GO:0003724
Trre14g02175 1122 Pfam DEAD/DEAH box helicase 546 717 IPR011545 GO:0003676|GO:0005524
Trre14g02175 1122 Coils Coil 90 172 - -
Trre14g02175 1122 PANTHER RNA HELICASE 461 941 - -
Trre14g02175 1122 FunFam probable ATP-dependent RNA helicase DDX17 483 733 - -
Trre14g02175 1122 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 730 IPR014001 -
Trre14g02175 1122 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 758 902 IPR001650 -
Trre14g02175 1122 Coils Coil 262 296 - -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 937 951 - -
Trre14g02175 1122 Pfam Helicase conserved C-terminal domain 755 863 IPR001650 -
Trre14g02175 1122 Gene3D - 474 731 IPR027417 -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 400 418 - -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 1 454 - -
Trre14g02175 1122 MobiDBLite consensus disorder prediction 307 344 - -
Trre14g02175 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 878 IPR027417 -
Trre14g02175 1122 SMART ultradead3 540 745 IPR014001 -
Trre14g02175 1122 CDD KH-I_AtRH42_like 1020 1121 - -
Trre14g02175 1122 CDD SF2_C_DEAD 742 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02175 Trre-Chr14 20388964 20392332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02175 509 872 Eukaryotic Initiation Factors Gene Family AT3G19760 33.152 4.89e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02175 K12811 - gmx:100784306 1458.74