Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02166 ATGGCTTCCACAACCCAAAACTCTGATTTTGCATATTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCCAGCCTTCTTATTACATCAACTGATGACCAATCTTTACCAAGCCCTAAAAGTGACAACGATTCCGACAAAATTGTAGATGCGCGTGAAATAAGTGCACCTCCTACTTGGAAGCGATACAAGGGCGTGAGGCGTAGGCCATGGGGTAAGTTCGCAGCAGAGATCCGAGATCCAAAGAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATTTGACCGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCAAAAAGCCAAACTTAATTTTCCCCACCTCGTTGACTCTGATGTGTTGACATCAGAGCCAAAGAAGGAGGTGGTTTTGAAATGGGACTCGCCGGAGCCTTCTTCATCGGAGGGAAGTTGCGAGTCAACGTCACCGAGGTCGAAGAGGAGAAGGGGCATGGTTGACCTACTTAACAAATTAGCTAAGAATAAAAATCAAGCCATGGTGTTTGAAATTGAAAAAGCCTCACAAGCAAATGATGGTTTTGAGCAATGGGTGAATGAGTTGAATGATTGCACTATAATCTGGAGCTCATAG 636 0.4434 MASTTQNSDFAYLEHIQQYLLFDDSSLLITSTDDQSLPSPKSDNDSDKIVDAREISAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKLNFPHLVDSDVLTSEPKKEVVLKWDSPEPSSSEGSCESTSPRSKRRRGMVDLLNKLAKNKNQAMVFEIEKASQANDGFEQWVNELNDCTIIWSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02166 211 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Trre14g02166 211 PRINTS Ethylene responsive element binding protein signature 103 123 IPR001471 GO:0003700|GO:0006355
Trre14g02166 211 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Trre14g02166 211 MobiDBLite consensus disorder prediction 31 52 - -
Trre14g02166 211 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Trre14g02166 211 MobiDBLite consensus disorder prediction 139 163 - -
Trre14g02166 211 PANTHER DNA-BINDING DOMAIN 52 182 IPR044808 GO:0003700|GO:0009873
Trre14g02166 211 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Trre14g02166 211 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Trre14g02166 211 Gene3D AP2/ERF domain 62 123 IPR036955 GO:0003700|GO:0006355
Trre14g02166 211 FunFam Ethylene-responsive transcription factor 2 62 122 - -
Trre14g02166 211 CDD AP2 62 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02166 Trre-Chr14 20265299 20265934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02166 63 150 AP2-EREBP Transcription Factor Family AT2G44840 68.182 1.21e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g02166 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02166 K09286 - gmx:102663872 233.802