Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02154 ATGGCCAATGTTGATTTTCTTGAAAATTCCATTACTACCCCTACCTCCACCAATACTCTAAAGCTCTTTGGCATCAACATTCAAGAAGAACCTTGTTTGATTAATCAATCTCTACCACTAATATCATCACAATCAGAATCATCTGAGCCTTTGAATGAGAGAAAATTATACGAGTGCCAATATTGTTGTAGAGAATTCGCAAATTCACAAGCATTAGGAGGACACCAAAATGCGCACAAGAAAGAAAGACAACTTTTGAAGCGTGCTCAAATGCAAGCTGCTCGTCGGTTTGTTCCTTCGCATTTCCATAACACATTCATGTCGCAGCCGATGCCGCAACATCATTTCTTCGCCGATGGTATAATACCGTCTCAACCACCTCCGTCGTCGTGGTTATACATGAGACCTGAAGCAGGTTCAAGAACTTATTTAGCTCCAACTGCAGGGTTTGATGGAAGCACTCATCACCATAGTTCTAAATTTGGTGGTTTCATTGGTGGTGATTGTAGTGAACAAGGGTTTGGTTTGAATTTACATCTTGGCCTATAA 549 0.408 MANVDFLENSITTPTSTNTLKLFGINIQEEPCLINQSLPLISSQSESSEPLNERKLYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARRFVPSHFHNTFMSQPMPQHHFFADGIIPSQPPPSSWLYMRPEAGSRTYLAPTAGFDGSTHHHSSKFGGFIGGDCSEQGFGLNLHLGL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02154 182 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre14g02154 182 PANTHER ZINC FINGER PROTEIN 5 12 182 IPR044299 GO:0010090
Trre14g02154 182 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Trre14g02154 182 Gene3D Classic Zinc Finger 36 109 - -
Trre14g02154 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02154 Trre-Chr14 20108328 20108876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02154 15 133 C2H2 Transcription Factor Family AT1G67030 50.376 4.68e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02154 - - tpra:123891304 306.99