Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02100 ATGGATTTTAACAATAACTCGGTTCCACTAGATTATCCTTCAACTCCTCATTTGAATGAAGCTATGCAAAACAAAGAGGAGAAAAAGTTTCAATCTTTTTGGGAAAACCAGATGATCACCTTAGAACTTGATAAAGAATTTAAAAGTCAACTGGCTTTAACTCGAATCAGAAAGACCATGAAAGATGATGCAGATATGGTTAGTGCTGAATCTCAATTGTTGATGGCAAAAGCATGCGAGCTTTTGATTCAAGAGCTCACATTTCGTGCTTGGTTGAATACTGAAGAGAGAAAAAGAATTACTGTGAAGCCTATTGATGTCTCCAAGGCCATTATGGAAACTGATCCCTTTGATGATTTTTTCATGGATGTTGTTTCTCAATATTGTGCCTCTTGTGTCAAGGTAGAGAATGTTGAAAATCTTACGGTTGCAAACCAACATGAAAATATTGTGCAGCCTGCTGATATCCCCAAGGCCATTATTGAAAATGGCAATGAACTAGACTATGAAAATGTAGAAAAGTTTCTCTATGGAGACCAAGCTTTCTTTCCTGCAGCTGTAGATTTTATAGAAAATGATCAAATGGAAATAGACCAAGAGTTTGTCCAACCCTTCATGATGCAACCACCATTTATGCCTTCAGATCAATTTTCATTCAACTATCAACCAAATTATGTGAAAAAAATTAAGTCTCTGAATGTTTCGTTGGCATCGGCAAATTCAGCTAGCAGAAGTAATATTATTGGCTGGGCCGAGAAGCTCTATGGACAGTCAATATGTGCGGTGATTGCTGGTGTCAAAAATCTTTTATCTAGTGACAGGCAACTAGCATTGGCGAGGACTGTTGAAGCCTTGATTGAAGGGAGACCAAATCCTGAAATAGATATATACCTGGCATTCGATCCTCGTGCTCCCAAGTCTGGTTAA 927 0.3797 MDFNNNSVPLDYPSTPHLNEAMQNKEEKKFQSFWENQMITLELDKEFKSQLALTRIRKTMKDDADMVSAESQLLMAKACELLIQELTFRAWLNTEERKRITVKPIDVSKAIMETDPFDDFFMDVVSQYCASCVKVENVENLTVANQHENIVQPADIPKAIIENGNELDYENVEKFLYGDQAFFPAAVDFIENDQMEIDQEFVQPFMMQPPFMPSDQFSFNYQPNYVKKIKSLNVSLASANSASRSNIIGWAEKLYGQSICAVIAGVKNLLSSDRQLALARTVEALIEGRPNPEIDIYLAFDPRAPKSG 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02100 308 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 111 IPR003958 -
Trre14g02100 308 Gene3D - 277 306 IPR027482 -
Trre14g02100 308 SUPERFAMILY Histone-fold 19 118 IPR009072 GO:0046982
Trre14g02100 308 Gene3D Histone, subunit A 15 127 IPR009072 GO:0046982
Trre14g02100 308 Gene3D - 224 276 - -
Trre14g02100 308 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 129 - -
Trre14g02100 308 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 249 269 IPR043127 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02100 Trre-Chr14 19606043 19615655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02100 30 125 CCAAT-HAP5 Transcription Factor Family AT1G56170 49.495 3.75e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre14g02100 CBFD_NFYB_HMF 9.5e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02100 K19998 - tpra:123888203 259.61