Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02096 ATGCGTAAACCCGCCGATAACCGGTTGAAGCTCGAGATAGATGGAACCGGTACAACGTATTGGGAGAAAAATAAGAAGAATCGGCCGAGGAGGCCTCCGAGTGCTTTCTTTCTTTTCATGAAGGATGTCAGAGAGAGGTTCAGGAAGGAGGGAACTTATTCCCAGACATTTTTTGTCATTGAGTGTGCAAAAATTGCTGGTGCAGAATGGAAATCGATGTCTAATGCTGAGAAGGCTCCATACATTACTAAGGCCAAAAAAGAGAGAGCGGTGTATGAAAAGTTTATGCAAGCCTACAATATTGAATTGGCTGGTGACCAAGGTACTGCTTCTTTTCCTACATCAAAGACTAAGAAGGCATCAAGGACTAGGAAGGTGTCTGAAATGCCTTCCTCCCCATCAACTTCCTCTGCAGATGAGTCTTTGTCGTCGGCTGAAATCCAAGGGGTCCAGTCGAAGCCTTGCGGTCCACAAGCGACTGCTACTTCGACTCAATCTTTTGACTCGGGACAGGTGGTGAAAATACCTTCCTCTGAAGATGAGTCAGCTTCCTCTAAAGATGAGTCAACTTCCTCTGAAGATGGGTCAACTTCCTCTGAAGATGGGTCAACTTCCTCTGAAGATGGGTCAACTTCCTCTGAAGACGAGTCTTTGTTGTCGGCTGAAGTTCAAGCAGTCCAGTCGAAGCTTTTCGGTCCACAGGCGACTGCTACTCTGACTCAATCTTTTGACTCGGGTCAGAAAGTTCTGTCGGCAATGGAAGTTAAAACTTTGCCGACTTCTGATCCTGTCGGGTCGGTCTCTGACACTGTGATGGCCAACCCACAAACAAATGTCTCTCGATCTGTAGATGTAGTCATGAAGGACCAAGCAGTCATTCCTGAAGAAATGGTCACCTTGGGAGGGCCTTTCCAGGAAGCTGACTCTCATCAAGATCCAACGGAAGACCTACTTCACCAGGTTAAGCAAGAGTGTAGTGGTGACACTGACCCCGCAGATGACTTGCTTTCTTTGCTGACTGACTCAAGTCCTGCAGCTTCTGCGTTTTTTGGTCCATCCTCCACTACTGCTTGGCTTGATTCTAGTGACTCCAAAGCCATGGAACTTTTCAAAGAATTGAAGAGACTAGTGTCGAAGCCTTTTGACGTTGCTTCTGCTGACACCTCTGCATTCGACCAGATGAGGAGACTAGTTGAAGAACTCAAGCCTCTCAAGCAACGACTGCCTCTCTCAAGCCAAAGTACTCTTGAGCAGGTCAACAACTTTCTATCCCTTCATGCCTCCAAGAATGCTTTCTTAACCGCTACCCTTCCTGTTTACGAGCAAGCAGTGAATTCCAAAGAGGACTTGGTGAAGAAGCTTCTTCCTCTCAAAGAACAAAAAGACGAGATTGTAGTCAACAGAAAGCAGCAAGAGGCAGCCAAGGTCAAGGCTAAAGAGAAAGTTGACCAACTCAAGAAGCAATTGGCCTTGGCTGAGGCAGAACTAGCTGACGCAAACACTGGTATTGCTGCCTTTGTCAATTTGGAGAAGAAGCGTGTCGACAGCATCAATGCCCTTCGTGGTGAAGTGAATCAGACAGCGGAAATTCTAAGGAATCTTCAGTCCGACTACGAGTTAGCAGTGTGGATTAAGAAAGAACTTGAGGACCTGTGGTTGAAGATTACCCAATCTAGTTCCACTTGA 1686 0.4668 MRKPADNRLKLEIDGTGTTYWEKNKKNRPRRPPSAFFLFMKDVRERFRKEGTYSQTFFVIECAKIAGAEWKSMSNAEKAPYITKAKKERAVYEKFMQAYNIELAGDQGTASFPTSKTKKASRTRKVSEMPSSPSTSSADESLSSAEIQGVQSKPCGPQATATSTQSFDSGQVVKIPSSEDESASSKDESTSSEDGSTSSEDGSTSSEDGSTSSEDESLLSAEVQAVQSKLFGPQATATLTQSFDSGQKVLSAMEVKTLPTSDPVGSVSDTVMANPQTNVSRSVDVVMKDQAVIPEEMVTLGGPFQEADSHQDPTEDLLHQVKQECSGDTDPADDLLSLLTDSSPAASAFFGPSSTTAWLDSSDSKAMELFKELKRLVSKPFDVASADTSAFDQMRRLVEELKPLKQRLPLSSQSTLEQVNNFLSLHASKNAFLTATLPVYEQAVNSKEDLVKKLLPLKEQKDEIVVNRKQQEAAKVKAKEKVDQLKKQLALAEAELADANTGIAAFVNLEKKRVDSINALRGEVNQTAEILRNLQSDYELAVWIKKELEDLWLKITQSSST 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02096 561 Coils Coil 517 537 - -
Trre14g02096 561 Coils Coil 468 502 - -
Trre14g02096 561 MobiDBLite consensus disorder prediction 126 179 - -
Trre14g02096 561 PANTHER HIGH MOBILITY GROUP PROTEIN DSP1 24 200 - -
Trre14g02096 561 MobiDBLite consensus disorder prediction 107 221 - -
Trre14g02096 561 SUPERFAMILY HMG-box 22 103 IPR036910 -
Trre14g02096 561 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 29 100 IPR009071 -
Trre14g02096 561 MobiDBLite consensus disorder prediction 189 221 - -
Trre14g02096 561 Gene3D High mobility group box domain 19 110 IPR036910 -
Trre14g02096 561 SMART hmgende2 28 101 IPR009071 -
Trre14g02096 561 CDD HMG-box_AtHMGB1-like 31 92 - -
Trre14g02096 561 Pfam HMG (high mobility group) box 29 100 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02096 Trre-Chr14 19553823 19559063 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre14g02096 HMG_box 3e-16 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02096 K25507 - psat:127126822 340.117