Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02093 ATGGCTTCGAAATCCAAATCCCAAACCCTAGACCTAAACTCCACCCAACTATTCACCACCGCTCTTCAATCCCTCAACCTCCCTAAACCCTCTCTCCCACTGTCACCACTCCCTTCCTCCATCCCTCACTCCAATCTCATCCCCAACACCCGCTTCCTCATCGACGCTTTTCGCCACTCCGGCCACTTCTCCGTCTCCTATTTCCTCTCCCATTTCCACTCCGATCACTACACCGGTCTCACCTCCTCCTGGTCCAACGGCATCATCTTCTGTTCCCCAATCACCGCTCGCCTCCTCATCAACATCCTCAACATCCCTTCCTCATTCATCTACCCTCTCAATCTTCACCAACCTGTTACAATTGATGGATCTGTTATCACTCTCATTGACGCCAATCACTGTCCCGGCGCGGTTCAGTTCCTTTTTCAGGTTCCGTTTATGGATCAATCCTTGAGGTATGTTCATACTGGTGATTTTCGGTTTTCGAGTGAAATGATTTTGGATTCTGCACTTGGTTGTTTTATTGGTGCTGATGCTGTGTTTTTGGATACTACTTATTGTCATCCTAAATTTGTTTTTCCTACGCAAGATGAGTCGGTTAATTATGTTGTTGATATTGTAAATCACTGTGATGGTGATGATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGTAAGGAGAAGATCTTGCTTGAGATTGCTAAGAGGTTTGGAAAGAAGGTGCATGTTGATGCTAGGAAAATGGAGGTTTTGAGGGTGCTTGGGTATGGAGAGAGTGGTCAGTTTACTGAGAATTGTTTAGAGACGAATATTCATGTTGTTGGATGGAATGTGTTGGGGGAGACTTGGCCTTATTTTAGGCCTAATTTTGTTAAGATGAAAGAGATTATGATTGAGAGAGGGTACTCTAAGGTTGTGGGTTTTGTGCCTACTGGATGGACTTATGAAGTGAAGCGTGATAAGTTTGCCGTTAGGTCTAAGGATTCGTGTCGGATTCATCTTGTTCCGTATAGCGAGCATTCGAACTATGATGAGCTTAGGGAATATGTGAAGTTTTTGAAACCGAAGAGGGTTATTCCAACTGTGGGTTTAGATGTTGAGAAGAGTGATAGTAAACATGTTGACAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGACGGCCAACAAGCAAGAGTTTTTAAGGGGTTTTAAGCGGCGTGATTCTGGTGTAGTGGGTCCTGAATCCGGGAAGGATGTTTGTGATGATCTGGAACTAGGGAAGAGCATCGAGAAAGAAATGAAGCCGTCTGATGTGAGTCTGTCATCTTGTATGGGAGAAACTTGTGTAGAAGATCCTGCATTGCTAAATGATGAAGAAAAAGAGAAAGTCATTCAAGAATTGAGTTGTTGTTTGCCCACGTGGGTCACCCGAAGCCAGATGTTAGATCTGATCAGCATCTCTGGGAGCAACATCGTTGAAGCTGTTTCTAATTTCTTTGAACGTGAAATTGAATTCCACGAGCAAGTAAATTTGGGCCAAACTTCAGTTCCTGCACCTAGGTGTTGCTCATCGAATGACACCAGTACCAGTCCCATTTCAAAATCAAACCACAACGATACAAACAACACTTCAAAAAAATGCGACATTTTTCCAAGTCAAGACTCTAAAATGGTTAACCTAAGGCATCCATTACCAAATCAGGTATCCCCTTCCAAGAGAAAGAGGAGTACTGAAACTAAGTCAAACAAGAAGGTCAAAGTCAAGGCAAAATCAGAATCAAGTGGTTCAAAGCAGGCAACAATAACCAAATTCTTCAGCAAAGCAATGTCTGTGATGCCTGGTGATACCCAATCTGATCAACATGGATCAAAGCCCGATGAAAGCCCCAAAGTTGAAGAATTGTTGACAACTGATGCTGGAAACTTGTATAAGCAAGAGATTGATCAGTTTATGCAAATAATAAATGGGGATGAGTCATTAAAGAAGCAAGTAATTACTATAATTGAGAACACAAAAGGAGATATCAATAAGGCGTTGGATATATATTATTCTAATGCTTGCAATCTTGGTGGGAAGGAAATAGCAGTTCAAGGGGAATGCAAAATTGACAGACCTTTAGAGAATAAATGTGTGTCACAAGAATTAAGAGTTATACCCGATATTTCTATGCATAGAATGTTAAAAGATAATGTAGATGCAACTCATGTATCTCTACCATCTGAGAAATACAATCCTAAGAAACATGCGTGTTGGAGAGATGGAGAGCCTGCACCATATTTACATCTTGCACGAACCTTCAACCTGCTTGAGGAAGAGAAAGGAAAGATAAAAGCTACTTCAATACTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAACAAAATTGCTGCAGACCATGAAAATGTGGAACTAAATATTGGTGGAAGTTTAGTCACTACAGCACTCGAAGAGGCATGCGGAACAAATCGATTGAAAATAAGGGAGATGTATAATAAACTTGGCGACCTTGGTGATGTTGCTCAAGAGTGTCGCCAAACACAGAGATTGCTCGCACCACCTACACCACTTCTAATTAAGGATATTTACTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTACGAAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGTGAAAAGGAGATCAAATTTCTTGTTCGGACCTTGGTCAGGAACTTGAGGATTGGGGCAATGCTCAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGTTATGAATTCTCGCCCTACTGTGGGCCAAGAAGGAAAGGCAGAAAATTTGAAGGCAGCGCTTCAGGTCCTTTCTGTGGCAGTTGTCGAAGCATATAACATACTGCCAAATTTGGATATCATAGTCCCATCTCTCATGAACAAAGGCATTGAGTTTTCAGTTTCGAGTTTATCAATGGTTCCAGGAATCCCAATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGCTTTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTGGTTGATGGATCAGTTCGTGTTTTTTCAAGAAACGGAGAAGAATCAACTTCGAGATTCCCTGATCTGATTGACATGATAAAGGAATTTTGCAAGCCTGTTGCATCAACTTTCATAATCGATGCAGAGGTTGTTGCTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAGGCAAAGATACTTTAATTACTAAAGAGAGCATAAAGGTGGGCATTTGTGTCTTTGTCTTCGATGTCATGTTTGCAAATGGAGAACAGTTACTTGGTTTTCCTCTCCGCCAAAGACGAAAGTATCTGAAGGATTTGTTCTATGATGAACGGCCTGGGTATTTTGAATATGCAAAAGAAACAACTATCGAAGCTGATGATGCTTGCTTAACATGTGAAGCCACATTAACTAGAATAAATACTTTCCTTGAAGATGCACTCCGCTCTTCATGTGAAGGAATTATGGTGAAATCGTTGGATATTGATTCTGGGTATTCCCCATCGAAGCGTTCTGATAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCAATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTCATGGCATGTTTCAATCCTGAAACTGAGGAGTATCAGAGTGTATGCCGAGTGATGTCTGGGTTCTCGGACTCTTTTTACATAGAGATGAAAGAATTTTTTTCTGAGGACAAAATGTTGTCAAAAAAGCCACCATATTATCAAACAGGAGAGACACCTGACATGTGGTTTTGTCCGCAACTTGTTTGGGAAATAAGAGGTGCAGACTTCACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTAGCAGTGTGTCGGACAGAAACCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAATGTTTCAATTGCAGACTCGGAAGATGGATGTCACAACTGAAGGTTGA 4149 0.4124 MASKSKSQTLDLNSTQLFTTALQSLNLPKPSLPLSPLPSSIPHSNLIPNTRFLIDAFRHSGHFSVSYFLSHFHSDHYTGLTSSWSNGIIFCSPITARLLINILNIPSSFIYPLNLHQPVTIDGSVITLIDANHCPGAVQFLFQVPFMDQSLRYVHTGDFRFSSEMILDSALGCFIGADAVFLDTTYCHPKFVFPTQDESVNYVVDIVNHCDGDDVLFLVATYVVGKEKILLEIAKRFGKKVHVDARKMEVLRVLGYGESGQFTENCLETNIHVVGWNVLGETWPYFRPNFVKMKEIMIERGYSKVVGFVPTGWTYEVKRDKFAVRSKDSCRIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGLDVEKSDSKHVDKMRKYFAGLVDETANKQEFLRGFKRRDSGVVGPESGKDVCDDLELGKSIEKEMKPSDVSLSSCMGETCVEDPALLNDEEKEKVIQELSCCLPTWVTRSQMLDLISISGSNIVEAVSNFFEREIEFHEQVNLGQTSVPAPRCCSSNDTSTSPISKSNHNDTNNTSKKCDIFPSQDSKMVNLRHPLPNQVSPSKRKRSTETKSNKKVKVKAKSESSGSKQATITKFFSKAMSVMPGDTQSDQHGSKPDESPKVEELLTTDAGNLYKQEIDQFMQIINGDESLKKQVITIIENTKGDINKALDIYYSNACNLGGKEIAVQGECKIDRPLENKCVSQELRVIPDISMHRMLKDNVDATHVSLPSEKYNPKKHACWRDGEPAPYLHLARTFNLLEEEKGKIKATSILCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTTALEEACGTNRLKIREMYNKLGDLGDVAQECRQTQRLLAPPTPLLIKDIYSALRKISVQTGNGSTLRKKGIIVHLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAHAVVMNSRPTVGQEGKAENLKAALQVLSVAVVEAYNILPNLDIIVPSLMNKGIEFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHKLVDGSVRVFSRNGEESTSRFPDLIDMIKEFCKPVASTFIIDAEVVAIDRKNGYRIMSFQELSSRGRGGKDTLITKESIKVGICVFVFDVMFANGEQLLGFPLRQRRKYLKDLFYDERPGYFEYAKETTIEADDACLTCEATLTRINTFLEDALRSSCEGIMVKSLDIDSGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSEDKMLSKKPPYYQTGETPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFISSVSDRNPEECSTAADIVEMFQLQTRKMDVTTEG 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02093 1382 NCBIfam ATP-dependent DNA ligase 811 1370 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre14g02093 1382 SUPERFAMILY Metallo-hydrolase/oxidoreductase 48 363 IPR036866 -
Trre14g02093 1382 ProSiteProfiles ATP-dependent DNA ligase family profile. 1110 1257 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre14g02093 1382 Pfam DNA ligase N terminus 753 929 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre14g02093 1382 Gene3D - 1010 1223 - -
Trre14g02093 1382 Gene3D - 1224 1381 IPR012340 -
Trre14g02093 1382 Gene3D - 192 340 - -
Trre14g02093 1382 FunFam DNA ligase 192 340 - -
Trre14g02093 1382 FunFam DNA ligase 1028 1159 - -
Trre14g02093 1382 Pfam ATP dependent DNA ligase domain 999 1219 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre14g02093 1382 CDD Adenylation_DNA_ligase_I_Euk 990 1222 - -
Trre14g02093 1382 CDD SNM1A-1C-like_MBL-fold 47 189 - -
Trre14g02093 1382 Gene3D - 730 1001 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre14g02093 1382 Pfam DNA repair metallo-beta-lactamase 261 363 IPR011084 -
Trre14g02093 1382 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 273 1374 - -
Trre14g02093 1382 MobiDBLite consensus disorder prediction 511 589 - -
Trre14g02093 1382 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 732 982 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre14g02093 1382 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1023 1031 IPR016059 GO:0003909
Trre14g02093 1382 Gene3D DNA ligase/mRNA capping enzyme 1028 1159 - -
Trre14g02093 1382 MobiDBLite consensus disorder prediction 607 626 - -
Trre14g02093 1382 CDD OBF_DNA_ligase_I 1228 1370 - -
Trre14g02093 1382 FunFam DNA ligase 1224 1381 - -
Trre14g02093 1382 SUPERFAMILY Nucleic acid-binding proteins 1228 1372 IPR012340 -
Trre14g02093 1382 MobiDBLite consensus disorder prediction 511 545 - -
Trre14g02093 1382 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 994 1219 - -
Trre14g02093 1382 Pfam ATP dependent DNA ligase C terminal region 1245 1349 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre14g02093 1382 Gene3D - 47 362 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02093 Trre-Chr14 19530182 19545549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02093 738 1372 Core DNA Replication Machinery Family AT1G08130 40.000 1.52e-167 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02093 - - gmx:100807673 2136.3