Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02088 ATGGCCTTACAGAACATTGGTGCTGGCAACAGCGATGATGCCTTCTACAGGTATAAGATGCCTAGAATGATTACCAAAATTGAGGGCAGAGGCAATGGCATCAAAACGAATATTGTCAATATGGTTGATATTGCGAAAGCTTTAGCAAGGCCAGCTGCTTACACAACAAAGTATTTTGGTTGTGAACTTGGAGCACAGTCAAAATTTGACGAGAAAACTGGAACTTCTCATGTCAACGGAGCACACGACACTGCAAAACTTGCTGGTCTTCTTGAGAACTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACCAAGAATCAAATGATCCAGATGAAATGTGCTGCTTGTGGTTTTGTGTCTGACGTAGATATGAGAGACAAGCTTACTACTTTCATCATTAAGAACCCACCAGAAACAAAGAAAGCTTCGAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGATAGACTGAAGGTAGGTGAAGCAGCTGATGAGGAGCTGAAAAAACTGAAGAAAGAGGTTGTCAAGAAGAAAGTGACTTCTAAGGAAGGCACCACAAAATCAAGCTCTTCAAGGAAGAAAGGAAGTGGCTCTGATGAAGATCATACTTCTCCTACTCGAAGTCCAACCGATGAGAAGGATGATGCTGAAGATGAAGATGATGTACAATGGCAAACAGACACATCATTGGAGGCTGCTCGTCAACGAATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTCTCCACAACTGAACCAGAGAAGGAGAAAGCAGCCACTAAGGTAAGTGATAATCCTGGTAATGGTAACTCCATGAACTACAAGACTCTGGTTAGTGAACTCAAAGCTGATTTGAAGAAAGGTGCTTCGGCCAAAGAATTGGTGACCCATTGGGCATCACTTCCTGTCTCTCCACAAGAAAAGATGAGTGCTCTGTACGAAGCCCTGTTTGGGGACATTGAGAAAGGGTTTGCAAAAGAAACAATCAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCTGAGGAAGAGGGTATGCCATTGCTGTTGTTGCGTGCAATTGAGGAATTTTCTTTGAAGTCCACTTCCTCTGCACTTAAGGAGGTTGCCCTGGTTCTGAAGGCACTCTACGATGCTGATGCGTTGGAGGAAGAACACATATTGCAGTGGTATCAAGAAGGGCTGAAAAGCGAAAACAAGAACTCGCAGATTTGGAAGAACGTTAAACCCTTCATTGAGTGGCTTCAGAGTGCAGAATCAGAGTCCGAGGAAGAGTAA 1314 0.433 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQMKCAACGFVSDVDMRDKLTTFIIKNPPETKKASKDKKAMRRAEKDRLKVGEAADEELKKLKKEVVKKKVTSKEGTTKSSSSRKKGSGSDEDHTSPTRSPTDEKDDAEDEDDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTTEPEKEKAATKVSDNPGNGNSMNYKTLVSELKADLKKGASAKELVTHWASLPVSPQEKMSALYEALFGDIEKGFAKETIKKKNYLAAAVAEEEGMPLLLLRAIEEFSLKSTSSALKEVALVLKALYDADALEEEHILQWYQEGLKSENKNSQIWKNVKPFIEWLQSAESESEEE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02088 437 SMART 542_3 345 433 IPR003307 GO:0005515
Trre14g02088 437 ProSiteProfiles W2 domain profile. 277 437 IPR003307 GO:0005515
Trre14g02088 437 CDD W2_eIF5 286 430 - -
Trre14g02088 437 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Trre14g02088 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 436 IPR045196 GO:0003743|GO:0006413
Trre14g02088 437 MobiDBLite consensus disorder prediction 185 233 - -
Trre14g02088 437 MobiDBLite consensus disorder prediction 148 167 - -
Trre14g02088 437 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Trre14g02088 437 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Trre14g02088 437 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Trre14g02088 437 Gene3D - 280 428 - -
Trre14g02088 437 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Trre14g02088 437 MobiDBLite consensus disorder prediction 263 284 - -
Trre14g02088 437 SUPERFAMILY ARM repeat 286 431 IPR016024 -
Trre14g02088 437 Pfam eIF4-gamma/eIF5/eIF2-epsilon 362 437 IPR003307 GO:0005515
Trre14g02088 437 Gene3D - 3 104 - -
Trre14g02088 437 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Trre14g02088 437 Gene3D - 105 145 - -
Trre14g02088 437 MobiDBLite consensus disorder prediction 185 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02088 Trre-Chr14 19476010 19477323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02088 1 430 Eukaryotic Initiation Factors Gene Family AT1G36730 65.247 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02088 K03262 - gmx:100796346 643.269