Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02084 ATGTCTTCATCGGAACCTAAATACGAAATTCCACCGGCCCCAACATACAAGACCCCACCGGCACTAGTAGCATTCACCCTCACCGTCCTCATCCTATGCTTTGTGGCTTTTAGCGTCGTGTATCTTTGCAAGTATTGTTTTGCAAGCGTTTTGCATACTTGGGCCTTACAACGTACGGCCTCAGGATCCCTCGTTCGTCTCTCACCTGAGAGGTCACCTCCTAGGGGACTCGATCTTACCCTACTAGAAAAATTCCCAACATTCCTCTACGCCTCCGTAAAAGACCTTCGAAAGGAGAAGAGTTATAGCTTAGAATGTGCCATTTGTTTGCTAGAGTTCGAAGACGATAGCATGCTTCGTCTTCTAACCATTTGTTGCCATGTTTTCCACCAAGAATGTATTGACCTATGGCTTCAATCTCACAAGACATGCCCCGTTTGTCGAACCGACCTTGATTCACCTCCCGACCAAATGTCAAAACACGGCGGGGACAACACCACCACCACCACCAACAATAATGAACAAGAGGGTATGTCATCATTACCGTGCGATGATGACATACACATTGATATTAGAGAAGAGGAAAGAGACAGTGTTGGTGAGATCACTAGAGCTCAAATACATGAAGGGGATCAACATGTGAGTACAAGTATGAGACAACAAGAAGAACAAAGATTTTCAAGGTGTCATTCAACGGGACATTCTATAGTAATGATTAGAGGTGAAGAAAAAGATGATGAGAAATATACATTGATATTACCTGAACATGTTATAAGAGGAGGACACAACTGCACAAAGAGTTGTACAAATTACAGTGAAATGACATTGACAGTGCCTACACCTTGTAGTAATTGTGGTTTTATTAAACCAGTATCTGCCTCCTCTTCACTTGCTCAAGCTCAAGAGGCTTGA 912 0.4331 MSSSEPKYEIPPAPTYKTPPALVAFTLTVLILCFVAFSVVYLCKYCFASVLHTWALQRTASGSLVRLSPERSPPRGLDLTLLEKFPTFLYASVKDLRKEKSYSLECAICLLEFEDDSMLRLLTICCHVFHQECIDLWLQSHKTCPVCRTDLDSPPDQMSKHGGDNTTTTTNNNEQEGMSSLPCDDDIHIDIREEERDSVGEITRAQIHEGDQHVSTSMRQQEEQRFSRCHSTGHSIVMIRGEEKDDEKYTLILPEHVIRGGHNCTKSCTNYSEMTLTVPTPCSNCGFIKPVSASSSLAQAQEA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02084 303 SMART ring_2 106 147 IPR001841 -
Trre14g02084 303 Pfam Ring finger domain 105 148 IPR001841 -
Trre14g02084 303 MobiDBLite consensus disorder prediction 152 184 - -
Trre14g02084 303 FunFam E3 ubiquitin-protein ligase ATL6 66 154 - -
Trre14g02084 303 MobiDBLite consensus disorder prediction 159 179 - -
Trre14g02084 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Trre14g02084 303 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre14g02084 303 SUPERFAMILY RING/U-box 82 156 - -
Trre14g02084 303 PANTHER RING FINGER DOMAIN-CONTAINING 15 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02084 Trre-Chr14 19445919 19446830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02084 20 259 Rapid Response to Elicitors AT2G35000 34.286 8.13e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02084 - - gmx:100815505 342.428