Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02066 ATGGCAGATCCTTCTTCTTCCATCTTTGAGTTCTTCAAGCAACAACAACAACAACAACAACAACCATCTTCATCATCAAGAGCTCCTAGAAGATCCTCTTCATCTTCAACAACAAGAACTTTTCAATGCCATTTTTGTCACAGAAAGTTCTACACTTCTCAAGCTCTTGGTGGTCACCAAAATGCTCATAAACTTGAAAGAGCTGCTGCTAGAACAAGAACCATCAACCTCAACAACAACAATGGTACTGTCTCTCTCTCACCACCACCACCACAACAACAACTCATGAATGAACCAAAAACCTTAACTATGTCTCATGAACAACAACAACAACAACAACAACAGGGTGGTTTCTTTCATCATTATGAATACCCTTATTGGCAAAACCTTGAAATGGAACCACAATCTTTACAGTTTCATCATCAAAATGTTCCAACAAACACTTTTCCTATGGCTCCTTTCAATGCTTCTGGTTCATACTCTTTCACTCATCCTGATCAACATGTTTTCTACAACAATGTTTCTACTGCTGCTGTTTCTACTTCTCCATCTCATGATCAATTTGTTGATGCTTCTTCTGACCATGTCAATCTTGATCTCACACTTCACTTGTGA 615 0.3854 MADPSSSIFEFFKQQQQQQQQPSSSSRAPRRSSSSSTTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARTRTINLNNNNGTVSLSPPPPQQQLMNEPKTLTMSHEQQQQQQQQGGFFHHYEYPYWQNLEMEPQSLQFHHQNVPTNTFPMAPFNASGSYSFTHPDQHVFYNNVSTAAVSTSPSHDQFVDASSDHVNLDLTLHL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02066 204 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Trre14g02066 204 SUPERFAMILY beta-beta-alpha zinc fingers 38 68 IPR036236 -
Trre14g02066 204 PANTHER ZINC FINGER PROTEIN JAGGED 15 204 IPR045320 GO:0003700
Trre14g02066 204 MobiDBLite consensus disorder prediction 1 38 - -
Trre14g02066 204 Gene3D Classic Zinc Finger 17 87 - -
Trre14g02066 204 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02066 Trre-Chr14 19202918 19203532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02066 39 89 C2H2 Transcription Factor Family AT5G14010 62.745 8.74e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g02066 None None None