Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02050 ATGTCGTTTCCGTGCGACTACTGCGACACAAGAAGCGCGGTGCTGTATTGCAAACCAGACTCGGCAAAACTCTGCTTAGTTTGTGACCAGCACGTGCACTCGGCGAATGCTCTCGCACTCAAGCACGTGCGTTATCAGATTTGTCAAAACTGCAAAAACGACGCCGCTTCGGTTCGTTGCTTCACCGAAAATTTAGTTCAATGTCACCGGTGCGATTGGGATGCTCATGGCGGCGATTCCTCTTCCTCTTCTTCTCACTACCACCATAACCTCCGCCGTCTTGACGGACTCACCGGTTGTCCTTCCGTTCAAGAGATCGTGTCTGCTTTGGGACTTGATTTGAAGCCGAACGATGCCGTTTTTGTTGCGGAGTTTGAAGGTCCTGTTGTACCTGTTGTTCAGAATAGGGATGAGGTGTATGAACAGGTAGTGGAAGTTGCGAAGAGAAGAAGGAATTTGGATCGGTCAGTTGAAAATGAATTCAGATTCAATGATTGTAGTAATGAAGTTGATGATTTATTGTTGCTTCAGCAAACTCCATTTACTTCTTTGCTCAATTTTTCATCTGAATTTGATGTCGGTGCTAAGAAAAATCATAATAATGATTATGGAAATGAACCTGGTGTTCTTCTCTGGAATCATAATCCAACGTATCAGCCTCCTCAGGTCTGGGATTTTCAATTACAGAAATCAAGAGATATGACATTCAATGGTGTAGAAAATGCTTCCTTATCGATTCCAAAATCATTGCAAGATATGCATAACATGAATTGCTCAACACTTGGTGATGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCTAGCCATGTGAAGAAGAAAGTAGAAAGCAACAAGAAAACTAGAGATGAGTTATCATCCGAGTCCAGATTGATTGAATCTATAACATACAGTGGCGCCGACAAGGTACCAGTTATGGACCATCTTTTGAGTGGGAGTGAATATGTTAGCAACATAAATGCCAAGGTTAGCTTGGAAGAGCAAGCAAGGAATAGAGGGGATGCCATGTTACGCTACAAGGAGAAGAAGAAAACCCGAAGGTTCGACAAGCACATTCGCTACGAATCAAGGAAGGCTAGGGCTGATACGAGAAAGAGAGTGAGAGGGCGATTTGTTAAGGCGAGTGATACAAATGATAATCAAGAATGA 1176 0.4277 MSFPCDYCDTRSAVLYCKPDSAKLCLVCDQHVHSANALALKHVRYQICQNCKNDAASVRCFTENLVQCHRCDWDAHGGDSSSSSSHYHHNLRRLDGLTGCPSVQEIVSALGLDLKPNDAVFVAEFEGPVVPVVQNRDEVYEQVVEVAKRRRNLDRSVENEFRFNDCSNEVDDLLLLQQTPFTSLLNFSSEFDVGAKKNHNNDYGNEPGVLLWNHNPTYQPPQVWDFQLQKSRDMTFNGVENASLSIPKSLQDMHNMNCSTLGDDILSRNNQSDQSSSSHVKKKVESNKKTRDELSSESRLIESITYSGADKVPVMDHLLSGSEYVSNINAKVSLEEQARNRGDAMLRYKEKKKTRRFDKHIRYESRKARADTRKRVRGRFVKASDTNDNQE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02050 391 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Trre14g02050 391 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 385 - -
Trre14g02050 391 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre14g02050 391 MobiDBLite consensus disorder prediction 365 384 - -
Trre14g02050 391 Pfam CCT motif 341 383 IPR010402 GO:0005515
Trre14g02050 391 MobiDBLite consensus disorder prediction 278 298 - -
Trre14g02050 391 MobiDBLite consensus disorder prediction 365 391 - -
Trre14g02050 391 MobiDBLite consensus disorder prediction 261 299 - -
Trre14g02050 391 MobiDBLite consensus disorder prediction 261 277 - -
Trre14g02050 391 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre14g02050 391 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02050 Trre-Chr14 19075995 19079957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02050 5 385 C2C2-CO-like Transcription Factor Family AT2G33500 36.321 5.89e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre14g02050 CCT 2.1e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02050 - - aprc:113862926 464.922