Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02034 ATGGATGAGGGAGAAGGAAAGAAGAAAGTGGTGGTGAAAACCGAGGCGTGTGATTTGATGGCAGGTGTTGAAGATGAAGTTGGGTTTGTCAACGTGAAAGGAGACAATAACAACAACAACAATAAGAAGAAGATGATGATGATTAATGGGTCGGGTCAACGGATCCGAAATGATTATGGTTTTGTTACTTCTGCATTTGGTGCTGTTCAAAGGAAGAAAAGGATGGCTAGACAGAGAAGATCTTCATCTTCTACCATTACCATTCATCTCAAAAATCTTCCTTCTGCTACTTCTGCTACTACTACTACCTCCTCGCACGTGCCAATCTCACCACTTCCTCCTCTTTTTCACTCTCTCCCTCCCACACGTGAAATTGATCACAGGAGGTTGAGATTCCTTTTCCAAAAGGAATTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCGGCAGAGGCTTTTCTTCCTGCCCTCGAGGCGAAGGAAGGAATTCTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACCGGAGACTTTGTTAGCACACACGGTCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAATCAAACTCACAATTATGTAATTCAAGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGGAACTAGTGATACAATGAATGATATCTTCTTTGATGATTATGAGGTGAACAAAAGTTGCTTTGATGAAGCCTATCCTATAATGAATGATACAACAAGCATGTCATTTATATATGACACAACAATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACAAATTACTCAAGGATTGGATCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTGA 969 0.3983 MDEGEGKKKVVVKTEACDLMAGVEDEVGFVNVKGDNNNNNNKKKMMMINGSGQRIRNDYGFVTSAFGAVQRKKRMARQRRSSSSTITIHLKNLPSATSATTTTSSHVPISPLPPLFHSLPPTREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALEAKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQTHNYVIQAKKACDQDEYMEGTSDTMNDIFFDDYEVNKSCFDEAYPIMNDTTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02034 322 Pfam B3 DNA binding domain 134 230 IPR003340 GO:0003677
Trre14g02034 322 MobiDBLite consensus disorder prediction 75 106 - -
Trre14g02034 322 SUPERFAMILY DNA-binding pseudobarrel domain 132 236 IPR015300 -
Trre14g02034 322 SMART B3_2 134 236 IPR003340 GO:0003677
Trre14g02034 322 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Trre14g02034 322 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 240 IPR044800 GO:0003700
Trre14g02034 322 CDD B3_DNA 132 234 IPR003340 GO:0003677
Trre14g02034 322 FunFam B3 domain-containing transcription factor FUS3 130 245 - -
Trre14g02034 322 MobiDBLite consensus disorder prediction 80 106 - -
Trre14g02034 322 Gene3D - 130 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02034 Trre-Chr14 18911426 18914424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02034 49 322 B3 DNA Binding Superfamily AT3G26790 49.045 8.51e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g02034 B3 1.5e-15 CL0405