Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02033 ATGATGATGGATGAGGGAGAAGGAAAGAAGAAAGTGGTGGTGAAAACCGAGGCGTGTGATTTGATGGCAGGTGTTGAAGATGAAGTTGGGTTTGTCAACGTGAAAGGAGACAATAACAACAACAACAATAAGAAGAAGATGATGATGATTAATGGGTCGGGTCAACGGATCCGAAATGATTATGGTTTTGTTACTTCTGCATTTGGTGCTGTTCAAAGGAAGAAAAGGATGGCTAGACAGAGAAGATCTTCATCTTCTACCATTACCATTCATCTCAAAAATCTTCCTTCTGCTACTTCTGCTACTACTACTACCTCCTCGCACGTGCCAATCTCACCACTTCCTCCTCTTTTTCACTCTCTCCCTCCCACACGTGAAATTGATCACAGGAGGTTGAGATTCCTTTTCCAAAAGGAATTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTATTGCCAAAGAAAGCGGCAGAGGCTTTTCTTCCTGCCCTCGAGGCGAAGGAAGGAATTCTAATCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACCGGAGACTTTGTTAGCACACACGGTCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAATCAAACTCACAATTATGTAATTCAAGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGGAACTAGTGATACAATGAATGATATCTTCTTTGATGATTATGAGGTGAACAAAAGTTGCTTTGATGAAGCCTATCCTATAATGAATGATACAACAAGCATGTCATTTATATATGACACAACAATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACAAATTACTCAAGGATTGGATCAGTTGAAACCTTTGGCTCTGTTGAGAATTTGTCACTTGATGACTTCTATTGA 975 0.3979 MMMDEGEGKKKVVVKTEACDLMAGVEDEVGFVNVKGDNNNNNNKKKMMMINGSGQRIRNDYGFVTSAFGAVQRKKRMARQRRSSSSTITIHLKNLPSATSATTTTSSHVPISPLPPLFHSLPPTREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPALEAKEGILISMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNQTHNYVIQAKKACDQDEYMEGTSDTMNDIFFDDYEVNKSCFDEAYPIMNDTTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02033 324 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Trre14g02033 324 MobiDBLite consensus disorder prediction 77 108 - -
Trre14g02033 324 Gene3D - 132 249 IPR015300 -
Trre14g02033 324 FunFam B3 domain-containing transcription factor FUS3 132 247 - -
Trre14g02033 324 SUPERFAMILY DNA-binding pseudobarrel domain 134 238 IPR015300 -
Trre14g02033 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 242 IPR044800 GO:0003700
Trre14g02033 324 Pfam B3 DNA binding domain 136 232 IPR003340 GO:0003677
Trre14g02033 324 CDD B3_DNA 134 236 IPR003340 GO:0003677
Trre14g02033 324 MobiDBLite consensus disorder prediction 82 108 - -
Trre14g02033 324 SMART B3_2 136 238 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02033 Trre-Chr14 18911426 18914430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02033 1 324 B3 DNA Binding Superfamily AT3G26790 45.330 1.77e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g02033 B3 1.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02033 K09287 - gmx:100813055 399.438