Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02006 ATGTCCATCTTGCCCTCACAAACCCAAGCTACATCTTCATCTTCTTCGTCTATAACAATCCCTAACCCTAATTTACAACATGGAATTTCAGATACTACCTCTTCTCTTTCCCCGAAACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATTATCCAGGTCCATCAACTCCAGCTGCAGAAGATTCTGGCGGACCTTCCGAAAAGGTGACGGAATTAGAGTCTTCAAGTGGTATGAAGGCACCTCAGCGAAACTCTAGAACATATTCTAGGAGTCACTCAGGAAGACGGACAGTTGGATCGCCCCAGTCTGAGGGGAAGACAACAGGAACAGTTTCTTCTCATAGAAATCAACAGACTACCGGGTCTGTATATTCTCAAGGAAGCACCCCTTTGGCAGGGAGGAAATCTCAGATGGTGAATGGCAATCACTTGCTCAATTTTCAGTATGATCCAATATCACGTTCTCAACAAAGGGGTACTCCCCCTCCCCCTCCAGCAAGAAGGCAGAGGAAGAGAAGACCGTACAATAAAGATCTGTTTTTGCAGGCAAATTTCAAATTCATGGTACTAGATTCAGGAAACTATTCACCCGAGTCAATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTCGACTCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGCATCCCCTGTGTCCCCAAATAACCTCATGTGGGCACATTTTCTGTTTCCCATGTATACTACAATACTTGATGTTGGGTGAAGAGGATCACAAGGGTGATTGCTGGAAAAGGTGTCCATTGTGCTTTGTGATGATATCTGTCAAGGATTTATATACACTCCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCAGTTTCTTAACAAGGAAGAAGGATTCATTTACTCTTTCGTATAAAAATAAACAAGAGACTGATAACTCGTCATGTAGCCAACTAAATGTATATGACCCCTTTTCTAAGTTCACACTCACTTCAGATGTAGATCTCTCAGTCAGACATGCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGACGACCTGGAGAAGCTTCCATATGTTAGTGATGCAATGCAACAATTAAAACAGAGAAAGAAGTATTGGAATGAGCACAAGGCTTGTGACAGTGAAAAATCTTCTAACTCCATTGATTATGCACACCAGATACCATCAATATCTGCAAATGCTGTGGATACTGATGACGAAAGCTGTTCTAATGGATCAAGAACTTCCTCTACTGATTTCCCTGATCAAAGTAAGGTTGTAATGTTGGATAAGTCAACCACGGGAGCCTGTCAGGATGAAACTTTGGATGTGGACAAGGTACTAGTAGAGCAGGAAATGAATCTGTCTTCTTCGTATGAGGAGAAAAATTGTATTCAAGGGCATTCAAATGGCATTGGAGATGCAAAGGAGAATGATTCATACAATTTCTATCAGGCTGCTGATGGTCAACATATAATTCTTCATCCTTTGAACACGAAGTGTTTACTGCACCATTATGGTAGCTATGATAAGCTTCCTCACAGAATAAGTGGAAGGATTTTACAATTGGAGACAGTAACTCAATCTGAGGCTATGAGGAGGCGGTATCGATTTTTAAGTCATTTTCCGCTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGCGAGATGTTACCTCCTGAAGCACTAGCCCCATTTATGGATGAAATAAAGAATCGCGCAAACCAGAGGAAGCAACTTGCAAAGAAGGAACAAAAGGAAAAATTAAAGGCTGAAGCTGCTTCTAATTATGCTCTTTCCATGTCAACCCATTATCAGTTTATTTCTCGTGGTGATCCTCCCACGTTCTCCATGGATGACTTTGAAGCTCTGGGAAATTCAGCTTTGTCATCAAGTCCTCCAGTTGTTGGTGAGAAGAAATTGTTCTCAAGTGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCCTTTCAAACTCAAGAAACTAGCAATCTACATAATCGCAATTCAATTGCTGATTCTTCTGGTACAGCAGGTTTGAGGAATGGGGAGACACGATCATACTCCAATATCATATCTAGAGCAGAATCGAATGGAAGTTCGAATGCACCAAAGACAAATGACTTGGGAAAGAAAGGAAAGAAACCAAGTCGAGTTCTTCTGTCAACAGCTGGTGGCAGGCGTTATTGA 2244 0.4162 MSILPSQTQATSSSSSSITIPNPNLQHGISDTTSSLSPKLHHALGSLQISDYPGPSTPAAEDSGGPSEKVTELESSSGMKAPQRNSRTYSRSHSGRRTVGSPQSEGKTTGTVSSHRNQQTTGSVYSQGSTPLAGRKSQMVNGNHLLNFQYDPISRSQQRGTPPPPPARRQRKRRPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICVTYSTPFPVQCPICLEHPLCPQITSCGHIFCFPCILQYLMLGEEDHKGDCWKRCPLCFVMISVKDLYTLHITNVKQYQVGDNIEFSFLTRKKDSFTLSYKNKQETDNSSCSQLNVYDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVSDAMQQLKQRKKYWNEHKACDSEKSSNSIDYAHQIPSISANAVDTDDESCSNGSRTSSTDFPDQSKVVMLDKSTTGACQDETLDVDKVLVEQEMNLSSSYEEKNCIQGHSNGIGDAKENDSYNFYQAADGQHIILHPLNTKCLLHHYGSYDKLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEALAPFMDEIKNRANQRKQLAKKEQKEKLKAEAASNYALSMSTHYQFISRGDPPTFSMDDFEALGNSALSSSPPVVGEKKLFSSVTRLGFAAGHDSPSFQTQETSNLHNRNSIADSSGTAGLRNGETRSYSNIISRAESNGSSNAPKTNDLGKKGKKPSRVLLSTAGGRRY 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02006 747 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
Trre14g02006 747 FunFam RING finger protein 10 218 286 - -
Trre14g02006 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 330 IPR013083 -
Trre14g02006 747 SMART ring_2 225 271 IPR001841 -
Trre14g02006 747 SUPERFAMILY RING/U-box 224 278 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 671 725 - -
Trre14g02006 747 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Trre14g02006 747 CDD RING-HC_RNF10 223 280 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 1 41 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 149 175 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 670 747 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 69 136 - -
Trre14g02006 747 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Trre14g02006 747 PANTHER RING FINGER 10 FAMILY MEMBER 71 747 IPR039739 -
Trre14g02006 747 Coils Coil 583 603 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 416 436 - -
Trre14g02006 747 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02006 Trre-Chr14 18647249 18652398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02006 134 681 C3H Transcription Factor Family AT3G26730 57.270 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02006 K26979 - gmx:100798764 1120.15