Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g02000 ATGGTTGCTCAGTCGTTGGAGATTCGTGATTCTGTTGTGAACGGTGACAGTGGTGGTGTTGTTCCGATGGTTTCCGCGAAGAATGAGGTGAGTTCGACGGTGAAAATAAAGGTGAAATATAGTGGAAAGAAAACCGATTCGACGGAAACGTTACCAATGCAGAATCGGAGATCGAGCTCGAGAATCCAAGCTCAGCTGAAAGAAGCTGAGGAGAATAAGCTTCGTCGGAAAGCTGAAGGTTTAGCTGAAGAAGAAAAATCTGTTGAGGTTGTGACTCCGCCGAAGTCTAACAAGCGCGTTAAGAAAAGTTCCGGCGAGGTGAGTGTTCAGAAAAGTCCCGGCGAGGTGAGTGTGAGTAAGGAAGGTGTTTCCGAGAATGAGATGAAGAAGGATGAGGTTGTTTTGGAGAAAGAGACGAAGAAGAAGGAGAAGAAATCGGCATCGTCAGTGAAACGTGAGCTGATGGAAGTTCGGCATAAAAAAATAACGGCGGAGTCGGAAAATGCGGTTGCTGAAAATGCAGCTGGTGGTGGTTCATTAGGTGAGAAGAGCTTTACTGCTAAGGTGAAGGATACGATTAGGGTGTTTAACAAACACTATCTTCATTTGGTTCAGGAAGAGGAGGAGAGGGTTGCTAAAGCGAAAGCAGAAATTGAGAAGAAAGGTGGTGGGAAGAAATCTGCAAAAAAATCTCCGAAGAAGAAATCTACTAAAAATTCTCCTGAGAAGAAATCTCCTATAAAATCTACTGAGAAGAAATCAGCTAAGAAAGACTCTCCAGCTAAAGAAAAAAAGCACGCTGCCAAGCGACCTGATCTGAAGGCCTTAACAAAGATGATGAAGAATAATGAGATACTGTATCCTGAGAAGAGAATAGGCAATATTCCAGGTATTGAGGTTGGCTATCAGTTTTATTCTCGCGCTGAAATGGTTGCAGTTGGTTTTCATAGCCACTGGTTAAACGGTATTGATTATATGGGCCAAAGTTATACCAAAGTGTTCAACGAGTACAATTTCCCAATTGCTGTGGCCATTGTTTTGTCAGGCATGTATGAGGATGATCTAGATAATGCTGAGGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTAACGGGTGATAAGCGTCAAATGCGAGATCAAAAATTGGAGCGGGGTAATTTAGCACTCAAGAATTGCCAGGAGCAAAGTGTGCCAGTTAGGGTGATTCGAGGTCATGACTCTACTAGCAGTTACACTCGGAAAGTGTATACATATGATGGCCTGTACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCGGGCTTCACTGTCTATAAGTTTCGGCTTAGGAGGGTTGATGGACAGCCTACTTTAACAACACAACAGGTTTATTTCACATGTGGACGCGTACCTCAGACTGTAGCAGAAATACGAGGGTTGGTATGTGAGGATATCACTGAAGGTCAGGAAGATGTGCCCATTCCAGTTACAAATTTGGTTGATGAGTCTCCTGTTCCACCCATAGGTTTCAAATACTTAAAGTCTCTGAAGGTTGCAAAAAGTGTTAAGCTTCCTGCGAATGCCTCTGGGTGCAATTGCAAAGGCAGATGTATTGATCCGAGAACTTGTGAATGTGCAAAGCGCAATGGCTCTGAATTCCCCTATGTTTCTAAGGATGGTGGCAGATTAATTGAAGCTAAAGATGTTGTGTTTGAATGTGGTCCCAATTGTGGTTGTGATCCTGGTTGTGTGAACCGAACTTCTCAAAAAGGACTTCGGCATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCTGTTAGATCTTGGGATTTTATACCATCTGGTGCACCAGTTTGTGAATACACAGGAATACTTGGTAGGGCAGATGATGTGGACAGTGTGTTGGAAAACAACTACATTTTTGAGATAGATTGCTTGCAAACAATCAAGGGACTTGGTGGAAGGGAGAGGCGGTCACAAAATGTAGCATATGCTGCAACTCTGTTGGACAAATATGATGGCCAAGATTCTGAAGCACCAGAGTTTTGCATTGATGCGGGATCCACTGGAAATATTGCTAGGTTTATAAACCATTGTTGTGAGCCTAATTTGTTTGTACAATGTGTTTTGAGCACACACCATGATTTGCGATTGGCTCGAGTTGTGCTGTTTGCTGCTGACAACATACCCCCTTTACAGGAGCTGACATATGACTATGGCTATGCACTTGACAGTGTCTTGGACTCTGATGGGAAGATAAAGCAAATGGCGTGCTATTGTGGAGCTTCTGGCTGCAGGAAGCGATTGTTCTAA 2304 0.4358 MVAQSLEIRDSVVNGDSGGVVPMVSAKNEVSSTVKIKVKYSGKKTDSTETLPMQNRRSSSRIQAQLKEAEENKLRRKAEGLAEEEKSVEVVTPPKSNKRVKKSSGEVSVQKSPGEVSVSKEGVSENEMKKDEVVLEKETKKKEKKSASSVKRELMEVRHKKITAESENAVAENAAGGGSLGEKSFTAKVKDTIRVFNKHYLHLVQEEEERVAKAKAEIEKKGGGKKSAKKSPKKKSTKNSPEKKSPIKSTEKKSAKKDSPAKEKKHAAKRPDLKALTKMMKNNEILYPEKRIGNIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYTKVFNEYNFPIAVAIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQMRDQKLERGNLALKNCQEQSVPVRVIRGHDSTSSYTRKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRVDGQPTLTTQQVYFTCGRVPQTVAEIRGLVCEDITEGQEDVPIPVTNLVDESPVPPIGFKYLKSLKVAKSVKLPANASGCNCKGRCIDPRTCECAKRNGSEFPYVSKDGGRLIEAKDVVFECGPNCGCDPGCVNRTSQKGLRHRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILGRADDVDSVLENNYIFEIDCLQTIKGLGGRERRSQNVAYAATLLDKYDGQDSEAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLRLARVVLFAADNIPPLQELTYDYGYALDSVLDSDGKIKQMACYCGASGCRKRLF 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g02000 767 ProSiteProfiles Pre-SET domain profile. 524 586 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g02000 767 MobiDBLite consensus disorder prediction 63 105 - -
Trre14g02000 767 ProSiteProfiles YDG domain profile. 293 446 IPR003105 -
Trre14g02000 767 SUPERFAMILY SET domain 473 743 IPR046341 -
Trre14g02000 767 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g02000 767 Pfam Pre-SET motif 480 581 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g02000 767 Pfam SAD/SRA domain 292 450 IPR003105 -
Trre14g02000 767 MobiDBLite consensus disorder prediction 162 184 - -
Trre14g02000 767 Pfam SET domain 600 737 IPR001214 GO:0005515
Trre14g02000 767 ProSiteProfiles Post-SET domain profile. 751 767 IPR003616 -
Trre14g02000 767 SMART preset_2 477 573 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre14g02000 767 Coils Coil 197 217 - -
Trre14g02000 767 Coils Coil 59 87 - -
Trre14g02000 767 SMART set_7 589 743 IPR001214 GO:0005515
Trre14g02000 767 SUPERFAMILY PUA domain-like 275 465 IPR015947 -
Trre14g02000 767 MobiDBLite consensus disorder prediction 215 274 - -
Trre14g02000 767 Gene3D - 276 462 IPR036987 -
Trre14g02000 767 MobiDBLite consensus disorder prediction 238 274 - -
Trre14g02000 767 ProSiteProfiles SET domain profile. 589 737 IPR001214 GO:0005515
Trre14g02000 767 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 760 - -
Trre14g02000 767 MobiDBLite consensus disorder prediction 40 131 - -
Trre14g02000 767 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 90 767 IPR025794 GO:0016571
Trre14g02000 767 SMART G9a_1 288 450 IPR003105 -
Trre14g02000 767 Gene3D SET domain 470 767 IPR046341 -
Trre14g02000 767 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g02000 Trre-Chr14 18581650 18588405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g02000 279 767 EF-hand Containing Proteins AT5G13960 66.531 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre14g02000 SAD_SRA 1.3e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g02000 K11420 - gmx:100796701 959.903