Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01987 ATGGGTGTTGGTGGTAATTTCTGGGACTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGACTTATCGTTTTGGATTGTTCAACATAACAATGCTATCAAAACCCATGTCAACAAACCTCACCTCAGACTCACTTTCTTCCGTACAATTAATCTTTTTTCTAAGTTTGGAGCATTTCCCGTGTTTGTTGTTGATGGGACTCCATCGCCATTGAAATCGCAAGCCAGGATTGCTAGATTTTTCCGGTCATCTGGAATTGAATTGACTAGCTTGCCGGTACTTGGAGGCGGTGTTTCAGCTGATAAGAATAGTTCATTTTCAAAATGTGTTCAAGACTGTGTGGAACTTGCTAAGCTACTTGGGATTCCTGTACTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCGCAGTTAAATAGTGAAGGTCATGTCGATGCATGCATAACACCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCGTTATAAAATCTTTCGCTCCCAATTCCAAAGAACCGTTTGAATGCTACAACATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCACGATTTGAGTGGTGTTCAAGGGATTGGACTTGACAGTGCTCTTCGCTTTGTTCAAGGTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAATTCCTATTGACATTAAATCTGAAGACAATATGGATATTGACGGGAGCTCCTCAAATACGAAACAACCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATACGAAGTTTTCGTGTGAATTTTGTGTCACAGATGACAATGAAAGTTGCCTTAAAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAGGAAACATAAGGAGCAGAAAAAGATGGAAAATTGGCACACAAGAATTTGTGACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGATGAAATCATTGATATGTATTTATGCAATGACAATGGTTACTTTTCTGCAAATGATGGCCCTCAGTTCTCATGGGAACAACCAAAAGTTGAACTCCTGATTAGTTTTTTAAACTTCCATCAGCACTGGGATCCGTCATACATTCGAAGGATAATGTTTCCTATGATGTCCACCATATTTTTGAGAGAAATGGCTACAACTGCAACAGATAGTTTGTTATTTGGACAGTTTGAGTTTGATTCTTTAAAACGTGTGAAAACGAGATACGGATATCAGTTTTATGTTGTCAAGTGGAAACGTGTGATGGGCAGCAACGTTTCTTCTAAAACTCCATCAAATCAATCTGGCACGCAGCAAGATGCTATAGAGCTCGATGAAACGATGGATCTACATCTTCTGGACGATTGCGATTTGCCTGAGACTTGTGAAGAAGGTGGATGTAGTTTTCTATTGACAGATGAAAATATGGACCTTATAGGGGCTGCTTTTCCGGAAGAAGTGAAAAGGTTTTGGCAGGAACAGGAACTGAAGGATTCGAAAAGAAAAAAGAATCCAACCTCAAGATCTAAAGAAAATGAAACGTCGTCGACATCACCAAACTCAAAAGGTGTCCAGCTAAATATAACAGAGTTCTTCCCAACAACCAAAAGTAAAAATATTCCAAAACATGGAGAAGAGTCATCATCATCCAAGAAAAACGATAGCCCCGACAGTGGAGGCTCAAAAATGAAGAGGAAATCGTCAAGTCCTAATATTCCGAAATCTGTTAGGCGTCGCCTTTTGTTTGACTAG 1845 0.3984 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAIKTHVNKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVLGGGVSADKNSSFSKCVQDCVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCVIKSFAPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLSGVQGIGLDSALRFVQGFSEDDVLNRLHEIGKGNAFQIPIDIKSEDNMDIDGSSSNTKQPHCSFCGHPGSKKDHTKFSCEFCVTDDNESCLKKPEGFKCDCFSCGMNRKHKEQKKMENWHTRICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQFSWEQPKVELLISFLNFHQHWDPSYIRRIMFPMMSTIFLREMATTATDSLLFGQFEFDSLKRVKTRYGYQFYVVKWKRVMGSNVSSKTPSNQSGTQQDAIELDETMDLHLLDDCDLPETCEEGGCSFLLTDENMDLIGAAFPEEVKRFWQEQELKDSKRKKNPTSRSKENETSSTSPNSKGVQLNITEFFPTTKSKNIPKHGEESSSSKKNDSPDSGGSKMKRKSSSPNIPKSVRRRLLFD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01987 614 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Trre14g01987 614 Gene3D - 198 259 - -
Trre14g01987 614 MobiDBLite consensus disorder prediction 525 614 - -
Trre14g01987 614 CDD PIN_GEN1 2 202 - -
Trre14g01987 614 MobiDBLite consensus disorder prediction 525 540 - -
Trre14g01987 614 FunFam Flap endonuclease GEN-like 1 198 255 - -
Trre14g01987 614 FunFam Flap endonuclease GEN-like 1 2 197 - -
Trre14g01987 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Trre14g01987 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Trre14g01987 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Trre14g01987 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Trre14g01987 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Trre14g01987 614 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 551 IPR006084 -
Trre14g01987 614 Gene3D - 5 197 - -
Trre14g01987 614 MobiDBLite consensus disorder prediction 570 592 - -
Trre14g01987 614 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Trre14g01987 614 SMART xpgn3 1 96 IPR006085 GO:0004518
Trre14g01987 614 SMART xpgineu 128 198 IPR006086 GO:0004518
Trre14g01987 614 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 415 IPR036279 -
Trre14g01987 614 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Trre14g01987 614 MobiDBLite consensus disorder prediction 541 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01987 Trre-Chr14 18429712 18434160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01987 16 313 Core DNA Replication Machinery Family AT5G26680 26.126 2.63e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01987 K15338 - gmx:100791251 929.087