Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01974 ATGAAAGACACTTGCTGGTTCTTTAAGATCATGGTGGAAGATGTTGATGCAAGTTGTTCAGCAGAAGATTGGTTGTTACATGCAAAGGAACTTGTTCCTATTGCTCTTGATAAAGCAAGAGAGGTTAAAGGTTTTCCTACTAGATGGAAAATGATTATTTCTAGATTAGAACAGATTCCATCCATGTTATCGAATTTATCAAGCCATCCATGTTTCTCGAAGAACGCTCTTTGTAAGGAGCAATTGCAGGCTGTGTCGAATTCTCTCAGAGATGCGATCGAATCAGCTGAATTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCGGATGCAGAGTGATCTGGATGCATTAATAGGGAAAATGGATTTGAATTTACGAGATTGTGGACTTTTGATCAAAACTGGCATGCTCGGCGAGGCTACTTTGCCGTTGTCAGTGGCATCCGTGTCAGGTTCTGTGGAACAATCAGATTCTGCAGCACACAACAACATAAGGGAGTTACTCGCGCGCCTTCAGATCGGTCACTTAGAAGCGAAACACAAGGCTTTGGACAGTGTTGTTGAGGTTATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTATGAGTAGGAGTAATATATCTGCACTGGTTCAATTGCTTACAGCAACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCGGGTAGCTGCGAGGATTGGTTAGTTTCTGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAAGCTGCGATATCGCTTCAGAGGTTATCAATGTCGGCTGAAACATCGCGTGAAATAGTCGGACATGGTGGCGTTTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCTGTTTCGCAGGCTGCAGCAGCTTGTACATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTAGCTGAACAAGGGATTGTTAGGGTTATGATCAATTTGTTAACTTGTGGAATGTTGTTAGGTTCCAAAGAATATGCCGCAGAATGTTTGCAGAATCTCACTGGAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTCAGGAGTCTTTTAGTTTATCTTGACGGTCCACTTCCTCAAGAATCCGCGGTCGCGGCAATAAGGAATTTGGTTGGATCGGTTTCCGAGACAAGTTTGGTTTCATTAGGATTACTTCCTCGTTTGGTTCATGTTTTGAAATCAGGATCATCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCGACTGAGATGAAGAAATTGGTCGGCGAAGCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAGGCTAAACCAAGTAGTGCTAGAGAAATTTCTGCACAAGCATTAGCAAGCTTGATGACCGTGTCTTATAACAGAAGAGAAGTTAAAAAAGACGATAAAAGTGTGCCGAATTTGGTTCAGTTACTCGATCCTAGTCCTCAAAACAATGCAAAAAAATATGCAGTTACTTGCCTTGGATTGATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGTGCTATTGGATATTTAAAGAAACTTACTGAGATGGATATTCCAGGAGCTCAGAAGTTACATGAGAGATTGGAAAGAGGGAAATTAAGAAGTTTGTTTGGCAAGAAATAG 1707 0.4165 MKDTCWFFKIMVEDVDASCSAEDWLLHAKELVPIALDKAREVKGFPTRWKMIISRLEQIPSMLSNLSSHPCFSKNALCKEQLQAVSNSLRDAIESAELCLKEKYEGKLRMQSDLDALIGKMDLNLRDCGLLIKTGMLGEATLPLSVASVSGSVEQSDSAAHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNISALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAAISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACTLKNISAVPEVRQVLAEQGIVRVMINLLTCGMLLGSKEYAAECLQNLTGSNESLKRSVVSEGGVRSLLVYLDGPLPQESAVAAIRNLVGSVSETSLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKPSSAREISAQALASLMTVSYNRREVKKDDKSVPNLVQLLDPSPQNNAKKYAVTCLGLISSSKKCKKLMISYGAIGYLKKLTEMDIPGAQKLHERLERGKLRSLFGKK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01974 568 SMART arm_5 193 233 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 316 357 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 358 397 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 398 437 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 275 315 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 438 478 IPR000225 GO:0005515
Trre14g01974 568 SMART arm_5 479 521 IPR000225 GO:0005515
Trre14g01974 568 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 565 - -
Trre14g01974 568 SUPERFAMILY ARM repeat 164 547 IPR016024 -
Trre14g01974 568 Pfam Armadillo/beta-catenin-like repeat 280 315 IPR000225 GO:0005515
Trre14g01974 568 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Trre14g01974 568 Gene3D - 153 381 IPR011989 -
Trre14g01974 568 Gene3D - 382 551 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01974 Trre-Chr14 18273788 18276707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01974 385 543 U-box Gene Family AT2G23140 30.864 3.24e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01974 - - gmx:100789140 894.034