Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01965 ATGAGTTTTGGTGACAATAAGCCAGGTTATGGTGAAAAAGCTAAAAGCAACAGCAACATAATAATAATGCCTTCTAGTGCAATCTCACAATCAACTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGCTCTATCATTAGCACTTCAAACAAATATGGAAGGACAAGGTGTGAATAGATTAATTGCAGAGAATTTTCATGATTTGAGAAGGAACAGAGAAGAAGAAGAAGAAGAACATGAAAGCAGATCTGGTGGTAGTGATAACATAGATGGTGTTTCTGGTGATGATGCTGACAATCCACCAAGAAAAAAACGATATCACCGACATACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAAAGGCTTGAACTCAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAGCGCCATGAGAATTCACTACTTAGACAAACAAATGATAAGCTAAGAGTTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCTATGTGCTCAAATTGTGGAGGACCAGCAATTATTAATGAAATTTCACTTGAAGAACAACATCTAAGAATTGAAAATTCAAGATTAAAAGATGAACTAGAAAAAGTTTGTACACTTGCTAGCAAGTTTTTAGGCCGTCCGATAACGTCGATACCAAACTCAAGTTTAGAATTTAGTTTTGTTGGTAATTTGAACAACAATACTTTGCCTTCAACATTACCCTTAGGACAAGATTTTGGCATGGTGTCAATTTCACAACCTTCAACAATAAGAGCAACAAATAGTAGTAATGGTTTTGATAGATCAATAGAGAGGTCTATGCTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTAGTGAAAATGGCACAAACTAATGAGCCACTTTGGATTAGAAGTGTTGAAAGTGGAAGAGAAATTCTTAACCATGAGGAATATTCAAGGACAATAAGTACTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTCTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTGTCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAAATGTTCCCTTGTGTGATTGCAAGAACATCAACAAATGAAGTAATATCTAGTGGAATAAATGGAACAAGAAATGGTGCTCTTCAATTGATGCAAGCTGAACTTCAAGTACTATCTCCATTGGTTCCTATTCGTTTGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGGGTATGGGCAGTGGTTGATGTGTCTATAGATTCCATCTCACAAACTTCAGATGGTGCATCCACTTTTTTTAACTGTAGGAGGCTTCCTTCTGGTTGTTTGGTTCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTAGAGCATGCGGAATACGATGAAAGCCAAGTTCACCAACTCTATAAGCCCTTGCTAAGCTTAGGCATGGGATTTGGTGCACAACGTTGGGTTGCAACCCTACAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCTACATTTCCATCTAGAGAACAATCAGCAATAAGCTCAGGAGGAAGGCGTAGCATGCTAAAGCTAGCGCAGCGGATGACAAACAACTTTTGCGCTGGAGTTTGTGCATCAACGGTTCACAAATGGAACAAGTTGAATGAAGCAGGAAATGTGGGCGAGGATGTTAGGGTGATGACGCGAAAGAGTGTTGATGATCCTGGTGAGCCACCGGGGATTGTGCTCAGTGCAGCAACCTCCGTTTGGCTACCTGCTTCTCCGCAAAAAGTCTTCAATTTCTTACGAAACGAGAGGCTTAGAAGCGAGTGGGACATACTCTCCAATGGTGGACCTATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTCCTACGAGCTAGTGGTATTAATTCAAACCAAAGTAGCATGTTGATTCTCCAGGAAACATGCATCGATGCGTCGGGTTCATTGGTTGTGTACGCACCCGTAGATATACCTGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCTTACGTTGCACTTCTTCCGTCCGGCTTTGCCATCTTGCCTGATGGACATAGCGACGATAGTGATAATCACAGAGGCGGGTCGCAACATAGAGCAAATGGATCTCTTTTGACGGTCGCGTTTCAGATACTTGTGAATAGCCTTCCCACGGCAAAGCTCACGGTGGAATCAGTGGAGACAGTGAACAATCTAATTTCATGTACCGTTCAAAATATAAAAGCAGCACTTCAATGTGAGAGTTGA 2367 0.4081 MSFGDNKPGYGEKAKSNSNIIIMPSSAISQSTPTLVKSMFNSPALSLALQTNMEGQGVNRLIAENFHDLRRNREEEEEEHESRSGGSDNIDGVSGDDADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQTNDKLRVENMSIREAMRNPMCSNCGGPAIINEISLEEQHLRIENSRLKDELEKVCTLASKFLGRPITSIPNSSLEFSFVGNLNNNTLPSTLPLGQDFGMVSISQPSTIRATNSSNGFDRSIERSMLLELALAAMDELVKMAQTNEPLWIRSVESGREILNHEEYSRTISTSCIGLKPNGFVSEASRESGVVVINSLALVETLMDSNRWSEMFPCVIARTSTNEVISSGINGTRNGALQLMQAELQVLSPLVPIRLVNFLRFCKQHAEGVWAVVDVSIDSISQTSDGASTFFNCRRLPSGCLVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLLSLGMGFGAQRWVATLQRQCECLAILMSSTFPSREQSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNEAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPASPQKVFNFLRNERLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASGINSNQSSMLILQETCIDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAILPDGHSDDSDNHRGGSQHRANGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQNIKAALQCES 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01965 788 Coils Coil 202 222 - -
Trre14g01965 788 ProSiteProfiles START domain profile. 291 529 IPR002913 GO:0008289
Trre14g01965 788 FunFam Homeobox-leucine zipper protein HDG1 92 177 - -
Trre14g01965 788 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Trre14g01965 788 SUPERFAMILY Homeodomain-like 90 161 IPR009057 -
Trre14g01965 788 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Trre14g01965 788 CDD homeodomain 103 161 IPR001356 GO:0003677
Trre14g01965 788 FunFam Homeobox-leucine zipper protein GLABRA 2 300 525 - -
Trre14g01965 788 Pfam START domain 300 526 IPR002913 GO:0008289
Trre14g01965 788 MobiDBLite consensus disorder prediction 72 111 - -
Trre14g01965 788 Pfam Homeodomain 104 159 IPR001356 GO:0003677
Trre14g01965 788 Gene3D - 92 177 - -
Trre14g01965 788 Coils Coil 59 79 - -
Trre14g01965 788 SMART HOX_1 102 165 IPR001356 GO:0003677
Trre14g01965 788 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 100 785 IPR042160 -
Trre14g01965 788 SUPERFAMILY Bet v1-like 293 526 - -
Trre14g01965 788 SMART START_1 300 526 IPR002913 GO:0008289
Trre14g01965 788 CDD START_ArGLABRA2_like 295 525 - -
Trre14g01965 788 MobiDBLite consensus disorder prediction 72 86 - -
Trre14g01965 788 SUPERFAMILY Bet v1-like 554 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01965 Trre-Chr14 18214257 18226033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01965 22 788 Homeobox Transcription Factor Family AT3G61150 64.963 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre14g01965 START 4.8e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01965 K09338 - gmx:100783614 1203.73