Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01962 ATGAACACTTCAAATCCAACACCATCATCTCCACCGGAATCCACCGCCGACGACACCGAACCATTTCTCCACCGAACTCGCCGTTCCCTCCACCGCACACCAACACCACCACCACCACCACTCCGTACCGCTTCTCGTTTCATCCGTCGAGCAAGCTCACAGCATATGATGCTCAATGAACCATCCGTACGTGTTCGAGAGAGGGCGGCAGTTGAGGTAGAAGAGCGGCAGAGGGAATGGGCTTATTCGAAACCAGTCGTAGCACTTGACATAGCATGGAACTTGTCGTTTCTTGTTGTTAGTGTTGTCGTTTTGGGTTTGAGTAATAAAGAGGAACCTTGTGTTCCTCTTAGGGTGTGGATTTTGGGGTACTTGTTGCAAGGATTGGTTCATTCGTTGTGTGTTGTTTCGGAATTTAGAAGAAGGAGAAGGGATAGTGTTCTAGAAGATTCTTCTCATGATTTAGAGAGTGGTCCAAGGTGGAGTTTGAGTTCTGAGACTGATTCTGATGTTGATTTTGATTCTCAGCACTTTTTGGAGAATCAGGAAAATAGTATCATGAAGCACATAGAGTCTGCAAATACCATTCTATCATTCATATGGTGGGTTCTTGGGTTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAAGGATTCACCGCTGCTTTACTGGCTCTGTATCACATTTCTTGCTTTTGACGTTGTGATTGTAGTGATTTGTGTTGCTGTTGCATGTCTCATCGGAATTGCTGTTTGCTGTTGTCTTCCATGCATACTAGCGATTTTGTATGCAGTGGCAGATCAGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAGGTTCCGAATGATAAAGGAGTTTAAGCAAGAAGGCGATACCGAAGAATCATCCAGAGGAGTGATGACAGAATGCGACACTGACACTGACAGCGATCCAGCGTCTGAGCATGTCATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGACGACGGGGCTGAACTTAGAGAACTTCCTTGCAATCATCATTTTCATTGCACATGCATTGATAAATGGCTGCTAATCAACGCTACCTGTCCTCTCTGCAAATTTAATATTTTGAGCACCGATAACCTCCATGAAGAAGTTTGA 1152 0.4514 MNTSNPTPSSPPESTADDTEPFLHRTRRSLHRTPTPPPPPLRTASRFIRRASSQHMMLNEPSVRVRERAAVEVEERQREWAYSKPVVALDIAWNLSFLVVSVVVLGLSNKEEPCVPLRVWILGYLLQGLVHSLCVVSEFRRRRRDSVLEDSSHDLESGPRWSLSSETDSDVDFDSQHFLENQENSIMKHIESANTILSFIWWVLGFYWVTAGGQSLTKDSPLLYWLCITFLAFDVVIVVICVAVACLIGIAVCCCLPCILAILYAVADQEGATKEEIDQLPKYRFRMIKEFKQEGDTEESSRGVMTECDTDTDSDPASEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLHEEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01962 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 376 IPR013083 -
Trre14g01962 383 SMART ring_2 329 369 IPR001841 -
Trre14g01962 383 SUPERFAMILY RING/U-box 319 376 - -
Trre14g01962 383 MobiDBLite consensus disorder prediction 1 43 - -
Trre14g01962 383 MobiDBLite consensus disorder prediction 1 16 - -
Trre14g01962 383 PANTHER TARGET OF ERK KINASE MPK-1 51 376 - -
Trre14g01962 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
Trre14g01962 383 Pfam Ring finger domain 328 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01962 Trre-Chr14 18167948 18173012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01962 7 377 C3H Transcription Factor Family AT1G68070 46.092 5.85e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01962 - - tpra:123891576 614.379