Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre14g01933 | ATGAGTTTCTTGCAGGGAATCATTGATTCCTTTAACACTGTCTTCTCTCCACAATCCATTGATCAAAATTCTTCTTCTTCTCAAACCAATCCCAGAACTTCTTCATCAATGGAAGCTTCTCCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTACGATTTAGCCACTCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGATCGATGACGCTATTCTTCACTACAGGAATGCCCATAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTCATCACTTCAAGTGAGAAACAAAAGGTACAATCGTATCGTCAAAAGATATCAAAATGGCAGGGACAAGTATCCGAGAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTGCACCAACTGCTGCAGTTCCAACTAAACTATCAAATACTACAAAAAAAGTATTACAAAAGAATCCTCAAAGAAAAGATGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAAACATCTGGCGGAAATTATGACACAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGACGATGTTGGTGGCCTTGAAAAGGCAAAACAAGCTTTAATGGAGATGGTCATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCACCTGGCAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTGGGCGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACAACAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAATAGAGATCTAGAGATGCTTGTAAAAGAAACTGAAGGATACTCTGGAAGTGATCTGCAAGCGTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAATTTGGCTCAAATTGA | 1455 | 0.4151 | MSFLQGIIDSFNTVFSPQSIDQNSSSSQTNPRTSSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVANQSTSNLAPTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQNPKSSQTSGGNYDTKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTTNENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPNRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre14g01933 | 484 | Gene3D | - | 208 | 478 | IPR027417 | - | |
Trre14g01933 | 484 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 208 | 481 | IPR027417 | - | |
Trre14g01933 | 484 | Gene3D | - | 45 | 135 | - | - | |
Trre14g01933 | 484 | MobiDBLite | consensus disorder prediction | 19 | 44 | - | - | |
Trre14g01933 | 484 | CDD | MIT_spastin | 53 | 131 | - | - | |
Trre14g01933 | 484 | Pfam | Vps4 C terminal oligomerisation domain | 450 | 482 | IPR015415 | - | |
Trre14g01933 | 484 | MobiDBLite | consensus disorder prediction | 135 | 191 | - | - | |
Trre14g01933 | 484 | FunFam | Spastin, putative | 208 | 392 | - | - | |
Trre14g01933 | 484 | Pfam | ATPase family associated with various cellular activities (AAA) | 249 | 379 | IPR003959 | GO:0005524|GO:0016887 | |
Trre14g01933 | 484 | MobiDBLite | consensus disorder prediction | 135 | 165 | - | - | |
Trre14g01933 | 484 | FunFam | AAA-type ATPase family protein | 380 | 462 | - | - | |
Trre14g01933 | 484 | Pfam | AAA+ lid domain | 404 | 435 | IPR041569 | - | |
Trre14g01933 | 484 | SMART | smart | 53 | 130 | IPR007330 | - | |
Trre14g01933 | 484 | ProSitePatterns | AAA-protein family signature. | 351 | 370 | IPR003960 | GO:0005524|GO:0016887 | |
Trre14g01933 | 484 | SMART | AAA_5 | 245 | 381 | IPR003593 | GO:0016887 | |
Trre14g01933 | 484 | CDD | RecA-like_spastin | 214 | 377 | - | - | |
Trre14g01933 | 484 | Gene3D | - | 380 | 462 | - | - | |
Trre14g01933 | 484 | FunFam | AAA-type ATPase family protein | 46 | 135 | - | - | |
Trre14g01933 | 484 | PANTHER | AAA DOMAIN-CONTAINING | 107 | 483 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre14g01933 | Trre-Chr14 | 17842488 | 17847324 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre14g01933 | 190 | 434 | Calmodulin-binding Proteins | AT3G56690 | 41.833 | 1.13e-48 | 178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre14g01933 | K13254 | - | gmx:100780946 | 793.497 |