Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01929 ATGGTGGTATGCGCAAACTGCTCTCCTCTCCCACCCACGATGACTTCATCTCAGGAAAAACGCCACCGTTCCATCTTCGAACTTCCATCTGTCTACTTCAACTCTTCTCGTCTTCTCCCTTCTCCTTATTCCTCACTTTCCAACCACCACAACGAAACTCTTCAACCGCCCTCAAATCACGACGTCGATGATACTCAAAACGCCGTCGTTTCGGGTCCTAGGCTGACATGCAATACCTGTAAGGCTCAGTTTGATTCTCTTCAAGACCAACGCTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAAAATATTGTGAAGGAAGAGGATTTTGAGGATCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGTGATGATGATGACAGTGAAAATGAGTCTCGAGGTCAAATTGAAGTGCGTGGTAAATCTGGTGAAAGCTTTAAACAAAAGCTATTCGTCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGTGTTTGATTATGAATGTGACTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGAAAAATTTGGTTGAGAGGTTGAAATCTCTCACTGTTGAGCCCAGGGATAACACCCGATTAAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCAGGATGTGTCTTTGATGGTGACGCAGTTGTGGCTTCCAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAGCAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCTTCTGTTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGCCAGTTGACCCTAGTATCCTATGAAGCAGACGAGAAGGAAATTTTACAAAGCAAAGAGCAGGATGTGGTGCCAACTCGTATTGCTAAAAGAAATGGCGGCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGAATGAAAACGATAAAGCTGAAGTTTATTCCAGTAACAAAAATGATGAACCTCTTATTTCAAGTAATGAAGAAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAGTCTGGTGACTCTGAAAAGGTTATGGAACTTCTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACAAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGAGAAGCTGCTCTGCACATCCCACCTCCGCCGACCCTGCAACCGGTGACTCATCGTCCAGCAACCGGGAATCCAGCATCTGGCGACCAGCAGCCTGTTTCTGCTCTGTTTCCGGTGGCATATGTTTGGTCATTGTATGTGTCTGGGGCAAATGGATCATGGAGAGAGCAAAACAGAAACACAGATAA 1791 0.4372 MVVCANCSPLPPTMTSSQEKRHRSIFELPSVYFNSSRLLPSPYSSLSNHHNETLQPPSNHDVDDTQNAVVSGPRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENESRGQIEVRGKSGESFKQKLFVCLQTGQRVSLWKCLIMNVTENVVYEDEQVQKNLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDAVVASKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASVCIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSKEQDVVPTRIAKRNGGPPVSKVDMAGMNENDKAEVYSSNKNDEPLISSNEESENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQRSCSAHPTSADPATGDSSSSNRESSIWRPAACFCSVSGGICLVIVCVWGKWIMERAKQKHR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01929 596 Coils Coil 501 532 - -
Trre14g01929 596 MobiDBLite consensus disorder prediction 45 66 - -
Trre14g01929 596 ProSitePatterns Zinc finger C2H2 type domain signature. 77 99 IPR013087 -
Trre14g01929 596 Pfam Bacteroidetes VLRF1 release factor 220 357 IPR041175 -
Trre14g01929 596 SUPERFAMILY Ankyrin repeat 426 481 IPR036770 -
Trre14g01929 596 MobiDBLite consensus disorder prediction 525 557 - -
Trre14g01929 596 MobiDBLite consensus disorder prediction 407 435 - -
Trre14g01929 596 MobiDBLite consensus disorder prediction 538 557 - -
Trre14g01929 596 MobiDBLite consensus disorder prediction 400 440 - -
Trre14g01929 596 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 537 IPR047139 -
Trre14g01929 596 Gene3D - 388 535 IPR036770 -
Trre14g01929 596 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Trre14g01929 596 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Trre14g01929 596 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01929 Trre-Chr14 17791811 17797672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01929 20 530 C2H2 Transcription Factor Family AT1G01930 52.720 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01929 K26089 - gmx:100527709 707.983