Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01928 ATGACTTCATCTCAGGAAAAACGCCACCGTTCCATCTTCGAACTTCCATCTGTCTACTTCAACTCTTCTCGTCTTCTCCCTTCTCCTTATTCCTCACTTTCCAACCACCACAACGAAACTCTTCAACCGCCCTCAAATCACGACGTCGATGATACTCAAAACGCCGTCGTTTCGGGTCCTAGGCTGACATGCAATACCTGTAAGGCTCAGTTTGATTCTCTTCAAGACCAACGCTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAAAATATTGTGAAGGAAGAGGATTTTGAGGATCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGTGATGATGATGACAGTGAAAATGAGTCTCGAGGTCAAATTGAAGTGCGTGGTAAATCTGGTGAAAGCTTTAAACAAAAGCTATTCGTCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGTGTTTGATTATGAATGTGACTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGAAAAATTTGGTTGAGAGGTTGAAATCTCTCACTGTTGAGCCCAGGGATAACACCCGATTAAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCAGGATGTGTCTTTGATGGTGACGCAGTTGTGGCTTCCAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAGCAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCTTCTGTTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGCCAGTTGACCCTAGTATCCTATGAAGCAGACGAGAAGGAAATTTTACAAAGCAAAGAGCAGGATGTGGTGCCAACTCGTATTGCTAAAAGAAATGGCGGCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGAATGAAAACGATAAAGCTGAAGTTTATTCCAGTAACAAAAATGATGAACCTCTTATTTCAAGTAATGAAGAAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAGTCTGGTGACTCTGAAAAGGTTATGGAACTTCTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACAAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCTGAAAAACAAAAGATTGCTTCGACATCTGCTACCGGACAATCTCAACCAAAAAGTGGCGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAGTAATTCAACCACTTCAGAGGCTAATAAAAGTGGATTAGCCGGCGACATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTTGAAGATGGATGA 1908 0.4209 MTSSQEKRHRSIFELPSVYFNSSRLLPSPYSSLSNHHNETLQPPSNHDVDDTQNAVVSGPRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENESRGQIEVRGKSGESFKQKLFVCLQTGQRVSLWKCLIMNVTENVVYEDEQVQKNLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDAVVASKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASVCIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSKEQDVVPTRIAKRNGGPPVSKVDMAGMNENDKAEVYSSNKNDEPLISSNEESENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQAEAAEKQKIASTSATGQSQPKSGVKLSKEEEMKRAQDAEREKRAAAAERRMAALKIQASNSTTSEANKSGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01928 635 ProSiteProfiles Ankyrin repeat region circular profile. 412 444 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 546 571 - -
Trre14g01928 635 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 634 IPR047139 -
Trre14g01928 635 Pfam Bacteroidetes VLRF1 release factor 207 344 IPR041175 -
Trre14g01928 635 Pfam Vms1-associating treble clef domain 599 630 IPR041540 -
Trre14g01928 635 Gene3D - 375 504 IPR036770 -
Trre14g01928 635 MobiDBLite consensus disorder prediction 394 422 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 119 143 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 528 545 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 387 427 - -
Trre14g01928 635 ProSiteProfiles Ankyrin repeat profile. 412 444 IPR002110 GO:0005515
Trre14g01928 635 SUPERFAMILY Ankyrin repeat 413 468 IPR036770 -
Trre14g01928 635 ProSitePatterns Zinc finger C2H2 type domain signature. 64 86 IPR013087 -
Trre14g01928 635 Coils Coil 488 527 - -
Trre14g01928 635 Coils Coil 550 577 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 31 54 - -
Trre14g01928 635 MobiDBLite consensus disorder prediction 512 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01928 Trre-Chr14 17790643 17797633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01928 7 585 C2H2 Transcription Factor Family AT1G01930 52.745 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01928 K26089 - gmx:100527709 825.083