Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01927 ATGGTGGTATGCGCAAACTGCTCTCCTCTCCCACCCACGATGACTTCATCTCAGGAAAAACGCCACCGTTCCATCTTCGAACTTCCATCTGTCTACTTCAACTCTTCTCGTCTTCTCCCTTCTCCTTATTCCTCACTTTCCAACCACCACAACGAAACTCTTCAACCGCCCTCAAATCACGACGTCGATGATACTCAAAACGCCGTCGTTTCGGGTCCTAGGCTGACATGCAATACCTGTAAGGCTCAGTTTGATTCTCTTCAAGACCAACGCTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAAAATATTGTGAAGGAAGAGGATTTTGAGGATCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGTGATGATGATGACAGTGAAAATGAGTCTCGAGGTCAAATTGAAGTGCGTGGTAAATCTGGTGAAAGCTTTAAACAAAAGCTATTCGTCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGTGTTTGATTATGAATGTGACTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGAAAAATTTGGTTGAGAGGTTGAAATCTCTCACTGTTGAGCCCAGGGATAACACCCGATTAAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCAGGATGTGTCTTTGATGGTGACGCAGTTGTGGCTTCCAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAGCAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCTTCTGTTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGCCAGTTGACCCTAGTATCCTATGAAGCAGACGAGAAGGAAATTTTACAAAGCAAAGAGCAGGATGTGGTGCCAACTCGTATTGCTAAAAGAAATGGCGGCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGAATGAAAACGATAAAGCTGAAGTTTATTCCAGTAACAAAAATGATGAACCTCTTATTTCAAGTAATGAAGAAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAGTCTGGTGACTCTGAAAAGGTTATGGAACTTCTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACAAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGAGAAGCTGCTCTGCACATCCCACCTCCGCCGACCCTGCAACCGGTGACTCATCGTCCAGCAACCGGGAATCCAGCATCTGGCGACCAGCAGCCTGTTTCTGCTCTGTTTCCGGTGGCATATGTTTGGTCATTGTATGTGTCTGGGGCAAATGGATCATGGAGAGAGCTGAAGCTGCTGAAAAACAAAAGATTGCTTCGACATCTGCTACCGGACAATCTCAACCAAAAAGTGGCGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAGTAATTCAACCACTTCAGAGGCTAATAAAAGTGGATTAGCCGGCGACATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTTGAAGATGGATGA 2112 0.4347 MVVCANCSPLPPTMTSSQEKRHRSIFELPSVYFNSSRLLPSPYSSLSNHHNETLQPPSNHDVDDTQNAVVSGPRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENESRGQIEVRGKSGESFKQKLFVCLQTGQRVSLWKCLIMNVTENVVYEDEQVQKNLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDAVVASKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASVCIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSKEQDVVPTRIAKRNGGPPVSKVDMAGMNENDKAEVYSSNKNDEPLISSNEESENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQRSCSAHPTSADPATGDSSSSNRESSIWRPAACFCSVSGGICLVIVCVWGKWIMERAEAAEKQKIASTSATGQSQPKSGVKLSKEEEMKRAQDAEREKRAAAAERRMAALKIQASNSTTSEANKSGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01927 703 MobiDBLite consensus disorder prediction 599 622 - -
Trre14g01927 703 Coils Coil 501 532 - -
Trre14g01927 703 Gene3D - 388 533 IPR036770 -
Trre14g01927 703 MobiDBLite consensus disorder prediction 45 66 - -
Trre14g01927 703 ProSitePatterns Zinc finger C2H2 type domain signature. 77 99 IPR013087 -
Trre14g01927 703 SUPERFAMILY Ankyrin repeat 427 480 IPR036770 -
Trre14g01927 703 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 702 IPR047139 -
Trre14g01927 703 MobiDBLite consensus disorder prediction 599 613 - -
Trre14g01927 703 MobiDBLite consensus disorder prediction 525 557 - -
Trre14g01927 703 MobiDBLite consensus disorder prediction 407 435 - -
Trre14g01927 703 MobiDBLite consensus disorder prediction 538 557 - -
Trre14g01927 703 MobiDBLite consensus disorder prediction 400 440 - -
Trre14g01927 703 Pfam Bacteroidetes VLRF1 release factor 220 357 IPR041175 -
Trre14g01927 703 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Trre14g01927 703 Pfam Vms1-associating treble clef domain 667 698 IPR041540 -
Trre14g01927 703 Coils Coil 618 645 - -
Trre14g01927 703 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Trre14g01927 703 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01927 Trre-Chr14 17790643 17797672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01927 20 530 C2H2 Transcription Factor Family AT1G01930 52.720 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01927 K26089 - gmx:100527709 828.165