Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01926 ATGGTGGTATGCGCAAACTGCTCTCCTCTCCCACCCACGATGACTTCATCTCAGGAAAAACGCCACCGTTCCATCTTCGAACTTCCATCTGTCTACTTCAACTCTTCTCGTCTTCTCCCTTCTCCTTATTCCTCACTTTCCAACCACCACAACGAAACTCTTCAACCGCCCTCAAATCACGACGTCGATGATACTCAAAACGCCGTCGTTTCGGGTCCTAGGCTGACATGCAATACCTGTAAGGCTCAGTTTGATTCTCTTCAAGACCAACGCTCTCACTTCAAATCGGATATTCATCGATTCAATGTGAAGCTGACAATTGCTGGGAAAAATATTGTGAAGGAAGAGGATTTTGAGGATCTGACAACTGATTTTGTCAAAGACTGTGATGTGTCAAGTATATCTGGATCAGAAAGTGATGATGATGACAGTGAAAATGAGTCTCGAGGTCAAATTGAAGTGCGTGGTAAATCTGGTGAAAGCTTTAAACAAAAGCTATTCGTCTGTCTTCAGACAGGGCAGAGAGTTTCTTTATGGAAGTGTTTGATTATGAATGTGACTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGAAAAATTTGGTTGAGAGGTTGAAATCTCTCACTGTTGAGCCCAGGGATAACACCCGATTAAGGATTGTTCTGCTGGCATCCGGTGGGCACTTTGCAGGATGTGTCTTTGATGGTGACGCAGTTGTGGCTTCCAAGACATTTCACAGATATGTTGTGAGGGCCAAGGCTGGAAAAAAGCAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCTTATTTTGATGCTTCTGTTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACCAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGCCAGTTGACCCTAGTATCCTATGAAGCAGACGAGAAGGAAATTTTACAAAGCAAAGAGCAGGATGTGGTGCCAACTCGTATTGCTAAAAGAAATGGCGGCCCACCTGTCAGCAAAGTGGACATGGCTGGGATGAATGAAAACGATAAAGCTGAAGTTTATTCCAGTAACAAAAATGATGAACCTCTTATTTCAAGTAATGAAGAAAGTGAGAATGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAGTCTGGTGACTCTGAAAAGGTTATGGAACTTCTGGAACAGGGCTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCATATATGTTGGCACCTGACAAGGAAGTCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACAAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTAAAGCAAAAGAAAAGAAGGCTCAGGCTGAAGCTGCTGAAAAACAAAAGATTGCTTCGACATCTGCTACCGGACAATCTCAACCAAAAAGTGGCGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAGTAATTCAACCACTTCAGAGGCTAATAAAAGTGGATTAGCCGGCGACATATTATGTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTTGAAGATGGATGA 1947 0.4242 MVVCANCSPLPPTMTSSQEKRHRSIFELPSVYFNSSRLLPSPYSSLSNHHNETLQPPSNHDVDDTQNAVVSGPRLTCNTCKAQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEDLTTDFVKDCDVSSISGSESDDDDSENESRGQIEVRGKSGESFKQKLFVCLQTGQRVSLWKCLIMNVTENVVYEDEQVQKNLVERLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDAVVASKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASVCIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSKEQDVVPTRIAKRNGGPPVSKVDMAGMNENDKAEVYSSNKNDEPLISSNEESENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEVRNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQAEAAEKQKIASTSATGQSQPKSGVKLSKEEEMKRAQDAEREKRAAAAERRMAALKIQASNSTTSEANKSGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01926 648 Coils Coil 563 590 - -
Trre14g01926 648 MobiDBLite consensus disorder prediction 541 558 - -
Trre14g01926 648 MobiDBLite consensus disorder prediction 45 66 - -
Trre14g01926 648 ProSitePatterns Zinc finger C2H2 type domain signature. 77 99 IPR013087 -
Trre14g01926 648 Coils Coil 501 540 - -
Trre14g01926 648 Pfam Bacteroidetes VLRF1 release factor 220 357 IPR041175 -
Trre14g01926 648 Pfam Vms1-associating treble clef domain 612 643 IPR041540 -
Trre14g01926 648 SUPERFAMILY Ankyrin repeat 426 480 IPR036770 -
Trre14g01926 648 MobiDBLite consensus disorder prediction 407 435 - -
Trre14g01926 648 MobiDBLite consensus disorder prediction 525 585 - -
Trre14g01926 648 MobiDBLite consensus disorder prediction 400 440 - -
Trre14g01926 648 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 15 647 IPR047139 -
Trre14g01926 648 MobiDBLite consensus disorder prediction 559 584 - -
Trre14g01926 648 Gene3D - 388 517 IPR036770 -
Trre14g01926 648 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Trre14g01926 648 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Trre14g01926 648 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01926 Trre-Chr14 17790643 17797672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01926 20 598 C2H2 Transcription Factor Family AT1G01930 52.745 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01926 K26089 - gmx:100527709 826.624