Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01925 ATGTCTCGGGGTTTTGATTCTGTTCTTGATATCAATGATTCAAAGGAACTATGGAAACTAGCTGTTCGCGTTGAAGATCTTTGGACTGTTAGTAACCGAGGAAAAGAACACTTGGAGTTTCTTATCTTGGACAAACAGGGTGACCAGATTCAGGTTCTACTACCTAATGAACTATGTCCTTTGTGGAAATCTAAAGTCACTGAAGGTGCTACTTATGTCATGCAAAACTTCAAAATCCATCCAAATGACTTTAGCCTTAAGGCATGTCTACACCCGTTTAAGCTTGTCTTTGTTGGAGGAGATGGAGGAACAACTCTTAAACCAACTTTAATCCCTGAGATTCCTCAATACCGTTTAACCTTCAAACCCTTTGAAGAGATTTTAGAAGGGGGATATCATTCTGAAATTTTAGTTGATATTATTGGAGCTGTTCATGAGATCAAACCACAAAAGCAAACCATGGCTGCTAAAAAATGGCCCACATCATTTAGTTTGAAGGATGCAGCTATGAATATCATTCCTTGCGCATTGTGGGGTGAGCTTGGTAGACAATTCATGAACCATTACAATTCAAAGGCAGATGATGGACCTATGGTCATTATAATTAAACATGCTCAAATCAGAGAACCAAAAGGTCTGTTTGATCTCACTATTTCAAATGCTTGGACTGGAACCAAATTGATTGTAAATCCTGAGTTCAAAGAAATTAAGGATTTCACTATCAGTTTGCCGGAAAATTTCACATCTCCAACACAAGCTGGTTTCCTAACCGTTACAAGTAGTGGACAGTCATCACAAAACACTCAACCCTCGCAGTATTCTATACCAGCTCGATATTGTTTTAATGCACCCCCTAAGCATTTGTCTGAGCTTATGTCTTGTGCAGAAGATGAAATTGTAACAACAATTGGAACCCCTCATCATGTTATGGCTGCTAAACATGGTTGGTATTTAAAATGTTGTGACCACTGCTCAAAAAGCATTATCACAAAGGTGCCTCTATACACTTGCATTGATCCTAAGCATGTCACCCCTAATCCAAAGTTGAAATATAAAGTTGAGGTTGAAGTTCGCTATGAAGATCATAAAATGAGAACCGTTTTCTGGGACCGCGAATGTGAGTAG 1125 0.3884 MSRGFDSVLDINDSKELWKLAVRVEDLWTVSNRGKEHLEFLILDKQGDQIQVLLPNELCPLWKSKVTEGATYVMQNFKIHPNDFSLKACLHPFKLVFVGGDGGTTLKPTLIPEIPQYRLTFKPFEEILEGGYHSEILVDIIGAVHEIKPQKQTMAAKKWPTSFSLKDAAMNIIPCALWGELGRQFMNHYNSKADDGPMVIIIKHAQIREPKGLFDLTISNAWTGTKLIVNPEFKEIKDFTISLPENFTSPTQAGFLTVTSSGQSSQNTQPSQYSIPARYCFNAPPKHLSELMSCAEDEIVTTIGTPHHVMAAKHGWYLKCCDHCSKSIITKVPLYTCIDPKHVTPNPKLKYKVEVEVRYEDHKMRTVFWDRECE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01925 374 Gene3D - 5 101 IPR012340 -
Trre14g01925 374 SUPERFAMILY Nucleic acid-binding proteins 120 243 IPR012340 -
Trre14g01925 374 Pfam Domain of unknown function DUF223 41 137 IPR003871 -
Trre14g01925 374 CDD RPA1_DBD_A_like 19 100 - -
Trre14g01925 374 Gene3D - 282 374 IPR012340 -
Trre14g01925 374 SUPERFAMILY Nucleic acid-binding proteins 4 97 IPR012340 -
Trre14g01925 374 CDD RPA1_DBD_B_like 139 244 - -
Trre14g01925 374 Gene3D - 113 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01925 Trre-Chr14 17785572 17787401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01925 1 237 Core DNA Replication Machinery Family AT5G61000 22.000 1.46e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01925 - - lang:109343677 242.662