Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01905 ATGAGTCTAAACTCTAGTGCAAGCGGCGGTAGCAGTGGTGGTGGTGATGGTGGTGGTAGTGGCAATAGCGGTAGCCCTTGTGGGGCATGCAAGTTTTTGAGGAGGAAGTGTGTGCCAGGGTGTATTTTTGCTCCGTACTTTGATTCGGAGCATGGTACAACCCACTTCGCAGCTGTGCACAAAGTTTTTGGGGCTAGCAATGTATCCAAACTCCTCCTTGGGATTCCAATTAATAGGAGGCTTGATGCTGCAGTCTCTCTTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCTATCTATGGATGTGTTGGTCACATTTTTGCTCTCCAGCAACAGGTGCTGAGTCTACAAGCTGAACTCTCCTACATGCAAAGCCACATTAGTTCATCAGAGTTAAACCAACCTCCTCTACCACCACCACAGGTGGCCGTGGCACCAGCCGTCTTCTCCTTTGCCGATCTTCCACCACCCACCGCCACAACTATGCCGGCCACCTATGACATGTCTACACTTTTTGATCCTATGGGCCAACCTTCATTGGCTATGCAACAGAGGCCCAATATTGACCCACGTCAATATTTAGCTGCTCATGGCCCAACATCAACCACTAGTTCTCACAGACAAATTGGGTCTTCATCTGCACCAGCCTCCAATGCTTCATCATCTCCTTCCTTTTCCAAATTTTCAAAGTGA 693 0.4848 MSLNSSASGGSSGGGDGGGSGNSGSPCGACKFLRRKCVPGCIFAPYFDSEHGTTHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVLSLQAELSYMQSHISSSELNQPPLPPPQVAVAPAVFSFADLPPPTATTMPATYDMSTLFDPMGQPSLAMQQRPNIDPRQYLAAHGPTSTTSSHRQIGSSSAPASNASSSPSFSKFSK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01905 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 23 139 - -
Trre14g01905 230 MobiDBLite consensus disorder prediction 1 21 - -
Trre14g01905 230 ProSiteProfiles LOB domain profile. 25 127 IPR004883 -
Trre14g01905 230 Pfam Lateral organ boundaries (LOB) domain 26 124 IPR004883 -
Trre14g01905 230 MobiDBLite consensus disorder prediction 177 230 - -
Trre14g01905 230 MobiDBLite consensus disorder prediction 1 19 - -
Trre14g01905 230 MobiDBLite consensus disorder prediction 196 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01905 Trre-Chr14 17638788 17642594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01905 29 193 AS2 family AT2G45420 61.494 2.61e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre14g01905 LOB 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01905 K21994 - gmx:100777737 244.973