Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01903 ATGGATTTGGGATATGGTGGTGATGGACCTTGTGGTGCTTGCAAGTTTCTAAGAAGAAAATGTGTGAAAGGTTGTTGTATATTTGCACCTTATTTTGAATCATCAGGACAAGGAAGTGCTCATTTTGCTGCAGTTCATAAGGTGTTTGGAGCTAGCAATGCAGCTAAGTTACTGATGAGAATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGCTATGAGGCTCTTGCTAGAGCTACTGACCCTGTTTATGGTTGTGTGGCTCATATTTTTGCTCTTCAACAACAGGTTGTGGAGTTACAAGCAGAGTTGGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGAATCTCTCAAGATCCTCAATTTCAACAGCCTCAAAATTCTTCAATATCCCCAACTATGCATTCCTCATTACTTCATCATTTGTCATCAAACAATGAAACTTCTTACACGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAATAATCCATCATACTATTCCTATCATCAACAACTCAATGATCAAGAACTCCAAGCTAATTTGCCTCGAGAATTTTAG 591 0.3807 MDLGYGGDGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQVVELQAELAYVQARLSILNRISQDPQFQQPQNSSISPTMHSSLLHHLSSNNETSYTSMQNHHPIPFELSNFHNNNPSYYSYHQQLNDQELQANLPREF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01903 196 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 161 - -
Trre14g01903 196 Pfam Lateral organ boundaries (LOB) domain 10 110 IPR004883 -
Trre14g01903 196 ProSiteProfiles LOB domain profile. 9 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01903 Trre-Chr14 17563213 17565801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01903 13 128 AS2 family AT2G45410 71.795 2.24e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre14g01903 LOB 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01903 - K21994 mtr:11426685 320.087